Massilia antarctica: IV454_25570
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Entry
IV454_25570 CDS
T08186
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
manc
Massilia antarctica
Pathway
manc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
manc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IV454_25570 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
manc03400
]
IV454_25570 (ligD)
Enzymes [BR:
manc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IV454_25570 (ligD)
DNA repair and recombination proteins [BR:
manc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IV454_25570 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DUF6213
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QPI48841
LinkDB
All DBs
Position
complement(5800637..5803216)
Genome browser
AA seq
859 aa
AA seq
DB search
MPDALKIYQSKRNFSITSEPADGGEPASDALTFVIQKHWASRLHYDFRLELDGTMKSWAV
PKGPSYDTRDKRMAVHVEDHPISYSSFEGTIPEKQYGAGKVIIWDKGTWQPLDDPRKGYE
SGNLKFEMHGHKMHGKWVLVRMKGKGEKQEPWLLIKEKDDYARPAAEFSVVDEMPDSVSK
LPMPGAKGLKSKARAAAPVKAAPKAGGRGMPEGAVKAALPATLSPELATLVDQPPPDPTG
WIFEVKFDGYRLLARIEGKRVQLFTRNGHDWTRKLEPLHKELARLKLPDGWYDGEIVVHD
ENGKPDFGLLQLAFDGSNTADIVYFVFDAPYFKGYDQRDVPLEARRALLGAALEKAPSDA
VRFSSEFGTDPEELVVAACKLGLEGVIGKRRDSRYVSRRSPDWIKLKCGQRQEFVIGGYT
DPQGSRAGIGSLLLGTHDKDGVLQYAGNVGSGFTQAVLNDLKDKLSALDTDESPFPPKAV
AGRKHHWVKPKLVAEVSFAEWTSAGAIRHAVFQGLRSDKPARGIRREVANHVEDVMQTQT
TTQAKTKAKAGPKAKAEPDAPETTLPATLKITHGERVIDEQSGTTKIELIRYYALVGPLM
MEHLKGRPVSLVRAPSGVGGELFFQKHSEVGKLPGVKQMEPALDPEHPPMLEVGSVGGIL
SAAQWNVVEFHTQNAIGKSYETPNRMVFDLDPGEGVDWAAIQEAAQLMHAFLDELGLPSF
LKTSGGKGLHVVVPLKGGLDWDTVKDFSQEVVRHLAATLPDRFAFKSGPKNRVGKIFIDY
LRNGRGATTACAWSARVRPGLGISVPVGWDELAALKSGDQWTVHNAHTRLDRGNEPWDGY
AKAAKTLAAAMMKLGFKKE
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgccggatgcattgaaaatctatcaatccaagcgcaatttctcgatcacgtccgaaccg
gccgacggcggcgaaccggcgtccgatgccctgaccttcgtgatccagaaacactgggcc
agccgcctgcactacgacttcaggctggaattggacggtaccatgaaaagctgggccgtg
ccaaagggaccgagctacgacaccagggacaagcggatggcggtgcacgtcgaggatcat
ccgatatcgtactccagcttcgaaggcacgatcccggaaaagcagtacggcgccggcaag
gtgatcatctgggacaaaggcacctggcagccgctcgacgatccgcgcaagggctacgag
agcgggaacctcaagttcgagatgcatggccataagatgcatggcaagtgggttctggta
cggatgaagggcaagggcgaaaagcaggagccctggctgctgatcaaggaaaaggacgat
tacgccaggccggccgccgagttctcggtggtcgacgagatgcctgacagcgtcagcaaa
ctgcccatgccgggcgccaaagggttgaaatcgaaggccagggccgcagcacccgtgaaa
gcggctcccaaggccggcggccgtggaatgcccgagggtgcggtcaaggcggcgctgcca
gccacgctgtcgccggaactggcgaccctggtcgaccaaccgccgcccgatccgaccggc
tggatcttcgaggtcaagttcgacggctaccgcctgctggcccggatcgagggcaaacgg
gtgcaactgttcacccgcaatggccacgactggacccgcaagctcgaaccactgcacaag
gaactggccagactcaagctgccggacggctggtacgacggcgagatcgtggttcacgac
gagaatggcaagcccgatttcggcctgctgcaactggccttcgatggctcgaataccgcc
gacatcgtgtattttgtgttcgatgcaccttacttcaagggctacgaccagcgtgacgtg
ccgctcgaagcgcgccgcgcactgctcggcgccgcgctggaaaaggcgccgtcggacgcc
gtgcggttctcaagcgaattcggcaccgatcccgaggaactggtcgttgccgcctgcaag
ctggggctggaaggggtgatcggcaagcggcgcgactcgcgttacgtctcgcgccgctct
cccgactggatcaagctcaaatgcggccagcgccaggaattcgtcatcggaggctatacc
gacccgcaaggctcgcgcgccggtatcggctcactgctgctggggactcacgacaaggat
ggcgtgctgcagtacgccggcaacgtcggcagcggcttcacgcaagccgtgctgaatgac
ctgaaagacaaattaagcgccctcgataccgacgagagcccgttcccgcccaaggcggtc
gcgggccgcaagcatcactgggtcaagccaaagctggtcgcggaggtcagctttgccgag
tggaccagtgcgggggcgatccgccatgccgttttccagggcctgcgcagcgacaaacca
gccaggggaatccggcgcgaagtggccaaccatgtggaggatgtgatgcagacccagaca
acaacgcaagccaagaccaaggccaaggcaggaccgaaagcgaaggcggagccggacgcg
ccggagaccaccctgccggccaccctcaagatcacccacggcgaacgcgtcatcgacgaa
caaagcggcaccaccaagatcgaactgattcgctattacgcgctggtcggcccgctgatg
atggagcatctcaagggccggccggtgtcgctggtgcgcgcgccatccggcgtgggcggc
gaactgtttttccagaagcattcggaggtgggcaagctgcccggcgtgaagcagatggaa
ccggcgctcgatcccgagcacccgccgatgctggaggtgggcagcgtgggcggcatttta
tcggccgcgcagtggaacgtggtggagttccatacccagaacgccatcggcaaaagctat
gagacgcccaaccgcatggtgttcgacctggacccgggcgagggtgtcgactgggccgcc
atccaggaagcggcgcagctgatgcacgcttttctcgacgaacttggcctgccatcgttt
ctgaagaccagcggcggcaagggcttgcacgtggtggtgccgctcaagggcggcctcgat
tgggacacggtgaaggatttttcgcaggaggtggtgcgccatctggcggctaccttgccg
gaccgctttgcattcaagagcgggccgaaaaaccgggtcggcaagatcttcatcgattac
ctgcgcaacgggcggggcgccaccaccgcctgcgcgtggtcggcgcgcgtgcggcccggg
ctggggatttcggtgccggtcgggtgggacgaactggccgccctcaaatcgggcgaccag
tggaccgtgcacaacgcgcacacgcggctcgatcgcggcaatgagccgtgggatggctac
gcgaaggccgccaaaacgctggcggccgccatgatgaagctgggcttcaagaaggaataa
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