Mangrovimonas sp. YM274: RBH95_16390
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Entry
RBH95_16390 CDS
T09317
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mang
Mangrovimonas sp. YM274
Pathway
mang03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mang00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RBH95_16390 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mang03400
]
RBH95_16390 (mfd)
Enzymes [BR:
mang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBH95_16390 (mfd)
DNA repair and recombination proteins [BR:
mang03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RBH95_16390 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SBP_bac_3
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
WMI68712
UniProt:
A0AA51C1K1
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All DBs
Position
3742646..3746011
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AA seq
1121 aa
AA seq
DB search
MSKTVLSQTYAQMLQTQNLQTAIAKNQQTDALNTSPKTHVKGLVGSSFSFVVAETFQQTD
QPFLLVFNDKEEAAFYLNDLELLLGDKDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRI
NSRKKPAVIVTYPDALFEKVVTRKELEKNTLKISVNDKLSIDFVNEVLFEYKFKRVDFVT
EPGEFSVRGGIVDVFSFSHDEPYRIEFFGDEVDSIRTFDVESQLSTEQIKKITIIPNVAN
KLLEESRQSFFNYISKKSVVFIKNADMLFGRIDEFFKKAEEAFEKLGTEIKHATPEELFC
HSQLFKKQLLDFSIVEFGASSFFTAGSANKEVVYNTTPQPSFNKQFELLIDDLNNNHNKG
YTNYIACVSEQQAKRFHDIFDDMDQEVHYETIVLSLYQGFVDHDNKITCYTDHQIFERYH
KFQLKNGYAKKQAITLKELTNLDIGDYVTHIDHGIGKFGGLQKIEVEGKKQEAIKLIYGE
RDVLYLSIHSLHKITKFNGKDGKPPKVYKLGSKAWKTLKQKTKSRVKEIAFNLIQLYAKR
KLEKGFQYNPDSYLQHELEASFLYEDTPDQSTATADIKSDMESERPMDRLVCGDVGFGKT
EVAIRAAFKAVDNGKQVAVLVPTTILAYQHYRTFRERLKDFPVTVDYVNRFRTTKEKRTT
LESLASGGVDIIIGTHQLANKTVKFKNLGLLIVDEEQKFGVAVKERLKTLKDNVDVLTLT
ATPIPRTLQFSLMAARDLSVITTPPPNRYPIESHVIRFSEETIRDAVTYEIQRGGQIFFI
HNRIENIKEVAGLIQRLVPDAKVAIGHGQMDGKKLEELMLSFINGEFDVLVSTTIIESGL
DVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTPDARKRITALEQ
FSELGSGFNIAMKDLEIRGAGDLLGGEQSGFINDIGFDTYQKILNEAIEELKENEFKDLY
PDDGKEKEYVKDITIDTDFELLFPDDYINNITERLNLYTQLNDIKTEDALQKFESELVDR
FGEMPFQVVDLLDSVRIKWIAAKMGLEKVIMKKGKLIGYFISDQQSSFYQSQGFTKVLQY
VQSNPQACKMKEKETRTGLRLLLTFDHIKTVKQALSRLKDI
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaactgttctctcgcaaacctatgcacagatgttgcaaacgcaaaatctgcag
actgctattgccaaaaatcaacaaacagacgccttaaacacctctcccaaaacacacgtg
aagggattagtaggctcgtctttttcttttgtagttgctgaaacctttcagcaaacagac
caaccctttttattggtttttaacgacaaggaagaagctgccttttacctcaacgattta
gaattattattgggagacaaggatgtactgttctatcctggtagctatagacgcccttac
caaatcgaagaaacagacaatgccaatgtattgttgagagcagaggttttaaaccgaatc
aattccagaaaaaaacctgccgtaattgtcacctatccagatgccctctttgaaaaggta
gtaactaggaaagaactagagaaaaacacgcttaaaatttcggtgaacgataaactttcc
atcgattttgtaaacgaggtgctatttgagtacaaatttaaacgtgtagattttgtaacc
gagccgggagaattttcggtgagaggaggaattgtggacgtcttttcattttcgcatgat
gaaccttatcgcattgagttttttggtgatgaagtagacagtataaggacctttgatgtc
gagagccaactatcgacagaacagatcaagaaaataaccataatccctaacgttgccaac
aaactccttgaagaaagccgtcagagttttttcaactatatctctaagaaatcggtcgtt
tttatcaaaaatgccgacatgctttttggccgtattgatgagttttttaaaaaggcggaa
gaggcctttgaaaaattaggtacagaaataaagcatgccacacctgaagaattgttttgc
cattcacaactgtttaaaaagcaacttttagacttttcaattgttgaatttggagcgtct
tcattcttcactgcaggatctgctaacaaagaagtggtttacaataccacccctcagccg
tctttcaacaaacaatttgaattattaatagacgatttaaacaataaccataataaaggt
tacaccaattatattgcctgtgtaagtgagcaacaggccaaacgtttccatgatattttt
gacgacatggatcaagaggtacattacgaaaccattgtactttccttatatcaagggttt
gtagatcacgacaacaaaatcacctgctataccgaccatcaaatttttgagcgctatcat
aaattccaacttaaaaatggctacgccaaaaagcaggccattacccttaaggaacttacc
aatttggatattggcgactatgtcacccacattgaccatggcattggaaaatttgggggg
cttcaaaaaattgaagttgaaggcaaaaaacaggaagccatcaagctcatttatggcgag
cgtgatgttctgtaccttagcattcattccctacataaaattaccaagtttaacggcaag
gacgggaaacctccaaaagtatacaagctaggaagcaaggcttggaaaaccctcaaacaa
aaaacaaagtctagggttaaggaaatagcctttaatttaattcaactttatgccaagcga
aaactagaaaaaggatttcaatacaatccagacagttatctacagcatgagctggaggcc
tctttcctctacgaagatactccagatcaaagtaccgctacggccgatattaaatccgat
atggaaagtgagcgcccaatggaccgcttggtttgtggggatgttggttttggaaaaacc
gaggtggccatccgggccgcttttaaagctgttgacaatggaaaacaggtggccgttttg
gtaccaaccactattttggcttaccaacactaccgtacttttcgggaacgattaaaggat
ttccctgttacggttgattatgttaaccgttttagaacaaccaaagaaaaacgcacaact
ttggagagtttagccagtggcggtgttgatatcattattgggacacatcaattggctaac
aaaacggtgaagtttaaaaatcttggtttgctcattgtcgatgaggaacaaaaatttgga
gttgcggttaaagaacgtcttaaaacccttaaagacaatgtagacgtgcttacccttact
gctacaccaattcccagaaccttgcagtttagcttgatggccgccagagacctttcggta
attaccacgccaccacctaacaggtacccaattgagagccatgtaatccgttttagtgag
gaaactattcgtgatgccgttacgtatgaaattcaacggggtgggcagattttcttcatc
cacaaccgtattgaaaacatcaaggaagtagccgggctaatccaacgcttggtacctgat
gccaaagttgccattggccacggccaaatggatggtaaaaaattggaagaactgatgttg
tccttcattaatggtgaatttgacgtgcttgtaagtacaaccattattgaaagtggtttg
gacgtaccaaatgccaataccatttttatcaacaatgccaataattttggattgagcgac
cttcaccaaatgcgggggcgtgtaggccgaagcaacaaaaaggccttttgttattttata
acccctgaatactctgccatgactccggatgccagaaagcgtattacagctttggagcaa
ttctccgaattaggtagtggtttcaacatcgccatgaaagatttggaaatccgtggggcc
ggtgatttgttgggtggtgaacaaagtggatttatcaatgatattggttttgatacttac
caaaaaatattgaacgaggctattgaagaacttaaggaaaatgaatttaaggatctttat
ccggacgatggtaaggaaaaagaatatgtaaaagatattaccatcgacaccgattttgaa
ttgctattccccgatgattacatcaataatattacagaacgcctcaatctttacacgcaa
ctaaatgatataaaaactgaagacgcccttcaaaaatttgaatcggaattagttgatcgt
tttggcgaaatgccattccaagtggtggatcttttggacagtgtacgcattaaatggatt
gcagccaaaatgggccttgaaaaagtaattatgaaaaaaggcaaacttattggctatttc
ataagcgaccaacaaagtagtttttaccaaagtcaaggcttcaccaaagtcttacaatac
gtacaatctaatcctcaagcctgcaagatgaaagaaaaagaaacccgtacaggccttaga
cttctactaacatttgaccatataaaaacagtaaaacaagccttaagtagactaaaagat
atatga
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