Methanomicrobium antiquum: L1994_05260
Help
Entry
L1994_05260 CDS
T08973
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
manq
Methanomicrobium antiquum
Pathway
manq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
manq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L1994_05260 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
manq03400
]
L1994_05260 (uvrB)
DNA repair and recombination proteins [BR:
manq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L1994_05260 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L1994_05260 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
Flavi_DEAD
P-loop_SecA
AAA_30
Kinesin
AAA_22
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
WFN37795
LinkDB
All DBs
Position
complement(1063617..1065557)
Genome browser
AA seq
646 aa
AA seq
DB search
MQNITGFDLVSDFKPKGSQPDAIKKLTDGFNKGYKSQTLLGVTGSGKTFTIANVIQNTQK
PTLVLAHNKTLAAQLYNEFKDFFPNNRVEYFVSYYDYYQPESYIPSKDQYIEKDAQINPK
IEQMRLSATASLLSREDVIVVASVSAIYGLGNPENFENMGFEINVGEKIKRTDILKNLVD
ILFERNDLELMPGRFRVKGDTIDFIPGYFNNIIRIETFGDEIEKILEIDKLTGEKIESKD
YFFVYPARHYVIPDDDKTDAIAKIKTELEERLKELGPFEAHRLRQRTLFDIEMIEETGSC
KGIENYSRFFDHRKKGEKPFCLLDYFPDDFLLVVDESHQTLPQVRGMYNGDRSRKEPLVN
FGFRLPSAFDNRPLVFEEFEEYMHNVIFVSATPGIYEKEHSESFVEQIIRPTGLVDPEVF
VRPVEGQTQDVLNEIKKTIKNKNRVLITTLTKKLAEELTEFLAEKNIKTRYLHSDIETIE
RTEIIRQLRLGKFDCLVGINLLREGLDIPEVGFIGILDADKEGFLRDAKSLIQIIGRAAR
NAESYVVLYADNMTDSMKSAIAETKRRREIQIEFNKKHGIHPKTIIKPIKEKEADLTDIK
HLPKKEIPNLLIELESEMQMAANSLEFERAIKLRDQIKKIRAGSSL
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattaccggatttgatcttgtaagtgactttaaacctaaaggttcacaaccg
gatgcaataaaaaaattaaccgatggctttaataaaggctataaatctcagactcttttg
ggagttacaggctcgggaaagacttttacaatcgcaaatgtaattcagaacactcaaaaa
cccacacttgttctcgcgcataataaaacacttgccgcacagctttataatgaatttaaa
gacttttttccaaataaccgggttgaatattttgtatcatactatgattactatcagcct
gaatcatatattccttcaaaagatcagtatattgaaaaagatgcccagattaatcctaaa
attgaacagatgcgactttctgcaacagcctctcttctctcaagagaagatgttattgtt
gtggcgtctgtttcagcaatatatggtcttggaaaccctgaaaattttgaaaatatgggc
tttgagattaatgtcggcgagaaaatcaaaagaaccgatattttgaaaaatcttgtggat
attttattcgagagaaatgatcttgaactaatgcctggaagattccgggtaaaaggagat
actattgatttcatcccgggatattttaacaacataatccgcattgaaacttttggtgat
gaaatagaaaaaattctggagattgataagcttacaggagaaaaaatcgaatctaaggat
tatttctttgtttatccggcaagacattatgtaattccagatgatgacaaaacagatgca
atagcaaagataaaaacagagcttgaggaaagattaaaagaacttggaccatttgaggca
cacagacttcgtcaaaggactctttttgatattgaaatgatagaggagacaggttcatgc
aagggaattgaaaactattcacgtttttttgatcaccggaaaaaaggtgaaaagcccttt
tgtcttctggattatttccctgatgattttttgcttgtcgttgatgaaagtcatcagact
cttcctcaggtcagaggcatgtataatggtgatcgttcaagaaaagagccgcttgtcaat
tttggattcagattgccttctgcatttgataaccgcccccttgtctttgaggaatttgaa
gaatatatgcataatgtaatatttgtctctgcaacacctggcatttatgaaaaagaacat
tcagaaagctttgttgagcaaataattcgtcccacaggccttgtagatccagaagttttc
gtacgtcctgttgaagggcagactcaggatgttttaaatgagataaaaaagacaatcaaa
aataaaaaccgtgttttaattactactctgacaaagaaacttgctgaggagttaacggaa
tttttagctgaaaaaaatatcaaaacaagatacctccattcagatattgaaacaatagaa
aggacagagattataagacaacttcgcctaggcaaatttgactgtcttgtcggaatcaat
cttttaagagaaggtcttgatattcctgaagttggttttattgggatacttgatgcagac
aaggaaggatttttgcgggatgcaaaaagtctcattcagattatcggcagggcagcaaga
aatgcagaatcctatgtggttttatatgccgataatatgactgattcgatgaaatcagcc
attgctgagacaaaaagacgacgtgagatacaaatagaattcaataaaaaacacggaata
catccaaaaacaattattaaaccaataaaagaaaaagaggcagatcttacagacataaaa
cacctgccaaaaaaagagatcccaaatcttttaattgaacttgaatcagagatgcagatg
gcagctaattcacttgaatttgaaagggcgattaaattaagagaccagataaaaaagata
agggctggtagtagtctctga
DBGET
integrated database retrieval system
