Mariniplasma anaerobium: MPAN_000270
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Entry
MPAN_000270 CDS
T07723
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
manr
Mariniplasma anaerobium
Pathway
manr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
manr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MPAN_000270 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
manr03400
]
MPAN_000270 (mfd)
Enzymes [BR:
manr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MPAN_000270 (mfd)
DNA repair and recombination proteins [BR:
manr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MPAN_000270 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
TRCF
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
BCR35134
UniProt:
A0A7U9XVH0
LinkDB
All DBs
Position
27166..30582
Genome browser
AA seq
1138 aa
AA seq
DB search
MLDVIKIDKDLEKLLDQHKDTVYLKSSTDSYNCYLITKRFLKMKKTVFVVTANLYEAQKY
YDSLSLLNQEDDVLFYPADETLTSIMALGSPEFKSERLYTLKQLMTKEAFIVVTTMQGIS
QRQLTPQDYKKSVKQLLKNENYNISDLTTFLVYSGYQRTFTVEKPGEFSLRGHILDIYTL
NNEHPYRLDFFGDSLEQIKIFSVETQRSFAEVDTIEIAPMHELFYTDQMKDSAIKDIQKH
FEAFDLSERENEKFISDIESIDLRQKLDTLGLYIPFFNKKETTVLDFSQDKEIYLIDVHK
MKVNQEHIKDDLKTYQVTMNGQAFLSIKYRLPLESHLKKQHIEIDNFGISNPNAFSLNVM
ASNQYQSNLELFYTDMMDYIGKYKIYLCIKTNHYFEEMKSFLKFKKISYLRQIKDEVGVY
LLDISSHGSFISVHDQVVILDESELFTYKVRKAIRYRSVLNQSTKIRKVEDLTIGDYVVH
YDYGIGQYVGLKTMELSSEKRDYLHIIYANEEALYVPMDQIDMVLKYSSHEGQKPKISKL
GGKTWTKTKASVRMRIKDLSDRLIKLYAIRDQAQGFAFSKDNDMMEAFERDFKYETTRDQ
QKAIIETKHDMQQERPMDRLICGDVGFGKTEVALRASFKAVLNQKQVLYLVPTTVLARQH
YYTFKERFDKYGANVALLSRFVTPKQQKQTIEKLAKGYVDVVIGTHRLLSSDIKYKDLGL
LIIDEEQRFGVEQKEKIREIKHNVDTLTLSATPIPRTLQMSLMGLKDLSMIETPPMNRYP
VQTYVVERQDALIKEAITREISRGGQIFYLFNRVTGMEGMVRKLQKLVPDAKIGFAHGKM
NRESLESVISDFIDHQFDILVSTTIIETGVDIPNTNTLIIHEADKLGLSQLYQIRGRVGR
SDRIAYAYLLYDQFKSINDEAKKRLAVIQDFTALGSGYKIATRDLSIRGAGDILGAEQSG
FIDSVGIELYMKLLEEAITGESIEKEKSTQIDQIYAQRHVDPQYVAQDSARIEIHKRISE
LNNMPDIEDLKLELTDRFGQLDADLLLYMYEKLYKKLSYKIGAHQTIVDLNQTTLILSMD
ASSKIDGKKLFEKAESFKLAKIRLSYIRGHIHIQLITKNVKQHWLYLFDLFLEDFIYN
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgcttgatgtcataaaaatagacaaagatcttgaaaaactattagatcaacataaagat
acagtatatttaaagtcttcaacagatagctataattgttatttaataacaaagcgattc
ctaaagatgaagaagactgtttttgttgttacagcaaatttatatgaagcacaaaaatac
tatgactcgctatctttactcaatcaagaagacgatgttttattttatcctgcagatgaa
acactaacttcaattatggctcttgggtcaccagaatttaaaagtgagcgtttatatacg
ttaaaacagttgatgaccaaagaagcatttatagtcgttacaactatgcaaggcattagt
caaagacaactcacaccacaagactataaaaagagtgtaaagcaattattaaaaaatgaa
aattataatataagcgacctaactacatttttagtatacagtggataccaaagaacattt
actgttgaaaaacccggtgaattctcattaagaggccatattctagatatctacacttta
aataatgagcatccatatagacttgatttttttggagattcattagaacaaataaaaata
ttcagtgttgagacacaacgtagttttgcggaagttgatacaattgaaattgcacctatg
catgaacttttttatacagatcaaatgaaagattcagcaataaaagatatccaaaaacat
tttgaggcatttgatttatcagagcgagaaaatgaaaaatttatctctgatatagaatca
attgatcttagacaaaaacttgatacactaggcttgtatattccatttttcaataaaaaa
gaaacaacagttcttgatttttcacaggataaagaaatatatttgatagatgttcataag
atgaaagttaatcaagaacatatcaaagatgatttaaaaacttaccaagtgacaatgaat
ggccaagcctttttatccattaagtatagacttcctttagagtcacatttaaaaaaacaa
catatagaaatagataattttggcatatcaaatccaaatgcattttctctaaatgtcatg
gcatctaatcaatatcaatctaatctagaattattttatacagatatgatggactatatt
ggcaaatataaaatatatctatgtattaaaacaaatcattatttcgaagaaatgaaatca
tttttaaaatttaaaaagatatcatatctaagacaaataaaagatgaagttggtgtctat
cttctagatatttcaagtcatggttcatttatctcagttcatgaccaagttgttattctt
gatgaatcagaattgttcacctataaagttagaaaagcaattcgatatagaagtgtttta
aatcaatctacaaaaatcagaaaagttgaagatttaaccattggtgattatgttgtgcac
tatgattacggtattggacaatatgttggtttaaaaacaatggagcttagttcagaaaaa
agagactatctacatatcatttatgcaaatgaagaagctctatatgttccgatggatcaa
attgatatggttttaaaatatagcagtcatgaaggacaaaaaccaaaaatatcaaaactt
ggtggtaaaacttggacaaagactaaagctagtgttagaatgcgtattaaagatttaagt
gatagactaattaaactatatgcaattagagatcaagcacaaggatttgcgttttcaaaa
gataatgacatgatggaagcatttgaaagagatttcaaatatgaaactactagagatcag
caaaaagcaatcattgaaacaaaacatgatatgcaacaagaaagacctatggatagatta
atctgtggagatgttggatttggtaaaaccgaagtcgctcttcgtgcatcatttaaagca
gtacttaatcaaaaacaagttctatacttagtgcctacaacagttttagctagacaacat
tactatacatttaaagaacgttttgataagtatggtgcaaatgtagctttattgtctaga
tttgttacaccaaaacaacaaaaacaaactatagaaaaacttgcaaaaggatatgttgat
gttgttattggaacacatcgcttattatcatcagatataaaatataaagatcttggttta
ttaattatagatgaggaacaaagatttggtgttgaacaaaaagagaaaatcagagaaatc
aagcataacgtggataccttaacgctatcagcaactccaattcctagaactctacaaatg
tctttgatgggattaaaggatttatcgatgattgaaacaccaccgatgaatagatatcct
gttcaaacatatgtggttgaaaggcaagatgctttaatcaaagaagcaataacacgagaa
atttctcgtggtggacaaatcttttacttattcaatagagtaactggtatggaaggcatg
gtaagaaaacttcaaaaattagtaccagatgctaaaattggatttgctcatggcaaaatg
aatagagaatccttagaatctgtaatctcagactttattgatcatcaatttgatatttta
gtatctacaactattattgaaacaggtgttgatataccaaacacaaatacgttaatcatc
catgaagccgataaattaggattatctcaactttatcaaataagaggacgtgttggaaga
tctgatagaattgcatatgcttacttattatatgatcaattcaagagtattaatgatgaa
gcaaagaagaggttagctgttattcaagactttactgccctaggtagtggatataaaatc
gcaactagagatttatctattagaggagctggagatatattaggagctgaacaatctggt
ttcattgatagtgtaggtatagaactttatatgaaactattagaagaagcaattactggt
gagtctatagaaaaagaaaaatcaacacaaattgatcaaatctatgcacaacgacatgta
gacccacaatatgtggctcaagatagcgcaagaattgaaatacataaacgtattagtgaa
cttaataacatgcctgatatcgaagatttaaaattagaattaactgatagatttgggcag
ttagatgcagacctacttttatatatgtatgaaaaactatataagaaattatcatataaa
attggcgcacatcaaactattgttgatcttaatcaaacaacgcttattctttcaatggat
gcatcttcaaagattgacggtaaaaaattatttgaaaaagcagaaagctttaaattggct
aaaattagattaagttatattagagggcatatccacattcaattgattactaaaaacgta
aaacaacactggttatatttatttgacctatttttggaagatttcatatataattag
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