Marisediminicola antarctica: BHD05_06375
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Entry
BHD05_06375 CDS
T06401
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mant
Marisediminicola antarctica
Pathway
mant03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BHD05_06375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mant03400
]
BHD05_06375
Enzymes [BR:
mant01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BHD05_06375
DNA repair and recombination proteins [BR:
mant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BHD05_06375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QHO69328
UniProt:
A0A7L5AFS3
LinkDB
All DBs
Position
1337331..1341131
Genome browser
AA seq
1266 aa
AA seq
DB search
MILQGLIPALSRAQTFDAALKYARRSADFSLVDGLRAPLIAGLLDAREGPQSLFAIVATG
RDSESLRSALPSVMPDAEIIEFPAWETLPHERLSPSAETVGKRIHALRRLQAWQAQVDAC
GQARDIIVVASVRAALQPLSDNLTSLEPLRLVAGGRGYNLAALSSQLVDLAYSRVDMVTR
RGEFAVRGGILDVFAPDAEHPVRAEFFGDEIEHIRPFSVADQRSLSEQLADAELPASREM
LLGPEVRQRAREMQHEFPSLAQMLAKIAEGIPVDGMESLAPALVDRLVPITHYLPASTSI
AVLAPERVASRALSLVETNREFLSAAWNAATAGAEAPIDLDAGDFLTLPALRDASGARPW
WTFSGFNTGAAEPVAPVVRSAVRGGATAGGASAGGPTAGRTTAGGATPSGATDGTAAARP
SAVDTAASAAISALVEDAGEYVRIAADTVPSFAGRVDGAIDHLAARLADGWTVLVVAQGS
GLVERAAEALGEHGLAGRIVEDFPVDAEPGVAYLVKASVEHGFELPESKLAVVSESEFYG
RSAGFDSRQVKKLASRRKNVVDPLQLKTGDIVVHNTHGIGRFLELVQREVSTGGRNPVKN
SREYLAIEYAPSKRGYPGDKLYVPTDQLDLLTRYVGGEAPSLSKMGGSDWSAAKGKARKA
VRDIAVELVKLYSARMASKGHAFPPDTPWQRELEEAFPFAETPDQLTTIDEVKADMERPI
PMDRLISGDVGYGKTEIAIRAAFKAVQDGKQVIMLVPTTLLVRQHMETFAERFAGFPVHL
RALSRFQTEKESKEAIDGLADGTVDIVIGTHRLLSKGIVIKDLGLVIIDEEQRFGVEHKD
ALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVGPYSEKQVSA
AIRRELLREGQVFFVHNRVSSINRIASQLAELVPEARIAVAHGQLPEHMLEQVMVDFWER
KFDILVSTTIIETGLDIANANTLIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDAEK
PLGEVAHDRLSTIAANNDLGAGMQIALKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRMIG
EAVSAFRGDVAEGQTELRLELPVDAHVPEEYVESERLRLEAYQKLSAASGLTSADGAIDQ
VLDELTDRYGEPPQQVHNLIAVSRLRRMAQKAGLSEVVTMGGNLRVASAELADSIQIRLQ
RLYPGARYFAQTKSVSVPLPRIDGQGPDDATLIAWTSGLLVAIFGAELTSVAATDRESSA
GQEKSA
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
gtgattcttcagggcctaattccggcgctttcgcgcgcccagacgttcgatgctgccctg
aaatacgcgcgcagaagcgccgatttctctctcgtcgacggtctccgggcccctctcatc
gccggactgctcgatgcacgtgaaggtccccagtcgctcttcgcgatcgtggcaaccggg
cgcgactccgagtccctccgatcggctctcccgagtgtcatgccggatgccgagatcatc
gagttccccgcgtgggagaccctccctcacgaacgactcagccccagcgcggagacggtc
ggcaagcgcatccacgctcttcgccgcctccaggcctggcaagcgcaggtcgacgcttgc
ggacaggcgcgcgacatcatcgtcgtcgcgagcgtgcgcgcggcccttcagcccctctcc
gacaacctcacaagtctcgaaccgctgcgcctcgtcgccggtggccgtggctacaacctt
gcagcgctgtcctcccagctcgtcgacctggcctattcgcgggtcgacatggtcacccgc
cgcggagagttcgccgtgcgcggcggcatcctcgacgtcttcgcccccgacgccgagcac
ccggtgcgcgcggagttcttcggcgacgagatcgagcacatccgcccgttctcggttgcc
gaccagcgatcgctgtccgagcagctcgccgatgcggaactgcccgcgagccgcgagatg
cttctcggccccgaggtgcgtcagcgggcgcgcgagatgcagcacgagttcccgagcctc
gcgcagatgctcgccaagatcgccgagggcatccctgtcgacggcatggagtcgctcgcg
ccagccctcgtcgaccggctcgtgccgatcacgcactaccttcccgcgagcacctcgatc
gccgtgctcgcccccgagcgcgtagcctcccgcgccctgagcctcgtcgagaccaaccgt
gaattcctcagtgccgcgtggaatgcggccacggcgggtgccgaggcgcccatcgacctc
gacgcgggtgacttcctcaccctccccgcgctgagagatgcctccggcgcgcgtccttgg
tggaccttcagcggattcaacaccggcgccgccgagcccgttgcaccggtggtccgcagt
gcggtccgtggtggtgcgaccgcgggtggtgcgtcagcaggtggtccgaccgcgggtcgc
acgacggcagggggcgcgacacccagcggtgccaccgacggcacggctgccgcccgcccg
tcggcggtcgacaccgcagcatccgccgccatcagcgccctggtcgaggatgccggcgag
tacgtgcgcattgccgcggacaccgtgccgagcttcgctggccgggtcgacggagcgatc
gaccacctggccgcacgcctggccgacggctggacagtgctcgtcgtcgcccagggctcc
ggacttgtcgagcgcgccgccgaagcgctcggcgaacacggcctggccggtcggatcgtg
gaggacttccccgtggatgccgaacccggggtcgcctatctcgtgaaggcatccgtcgag
cacggtttcgagctgcccgagtccaaactcgcggtcgtgagtgagagcgagttctacggc
cgcagcgccggattcgactcccggcaggtcaagaagctcgccagccgccgcaagaacgtc
gtcgacccgctgcagctcaagaccggcgacatcgtcgtgcacaacacgcacggcatcggc
cggttcctcgaactggtgcaacgcgaggtctccaccggtggccgcaacccggtcaagaac
agccgcgagtacctcgcgatcgagtacgcaccctcaaagcgcggctaccccggcgacaag
ctctacgtgcccaccgaccagctcgacctgctcacccgctacgtcgggggagaggctccc
agcctcagcaagatgggcggcagcgactggtccgcggccaagggcaaggcccgcaaggcc
gtgcgcgacatcgccgtcgaactcgtcaagctctactccgcgcgaatggcgagcaagggc
cacgcgttcccgcccgacaccccctggcagcgtgagctcgaggaggcgttcccgttcgcc
gagacacccgaccagctgacaacgatcgacgaggtgaaggccgacatggagcggccgatt
ccgatggaccgcctcatctcgggcgacgtcggctacggcaagaccgagatcgcgatccgc
gcggcgttcaaggcggtgcaagacggcaaacaggtcatcatgctcgtcccgacgacgctg
ctggtgcgccagcacatggagacgttcgccgagcgattcgccggattcccggttcatttg
cgcgcgctcagccggttccagaccgagaaggagtcgaaggaggccatcgacgggctcgcc
gacggcaccgtggacatcgtcatcggcacccaccgcctcctgtcgaaggggatcgtgatc
aaagacctcggcctcgtgatcatcgacgaggagcagcggttcggcgtcgagcacaaggat
gccctcaagaagctgaagaccaacgtcgacatcctcgcgatgagcgccacgccgatcccg
cgaaccctcgagatggcggtgaccggcatccgggagatgtccaccctcgcgaccccgccg
gaagaccggcatccgatcctcacctttgtcggcccctacagcgagaagcaggtgagcgcc
gcgatccgtcgtgagctgctgcgcgagggacaggtgttcttcgtgcacaaccgcgtgtcg
agtatcaaccggatcgcctcgcaactggccgagctcgtgccggaggcgcgaatcgccgtg
gcccacgggcagctgccggagcacatgctcgagcaggtcatggtcgacttctgggagcgc
aagttcgacatcctcgtgtcgacgacgatcatcgagaccggcctcgacatcgccaacgcc
aacaccctcatcatcgaccgggcagacaagtacgggctcagccagcttcaccagctgcgc
gggcgcgtcggccgtgggcgtgagcgcgcctacgcctacttcctctacgacgccgagaag
cctctcggtgaggtcgcacacgaccgcctgtcgacgatcgccgcgaacaacgacctcggc
gccggcatgcagatcgctctcaaggatctcgagattcgcggcgccggaaacctcctcggc
ggggaacagtcgggacatatcgccggcgtcggattcgacctctacctgcggatgatcggc
gaagcagtgagcgcctttcgcggcgacgtcgccgagggccagaccgagctgcggctcgaa
ctgcccgtcgacgcgcacgtgcctgaggaatacgtcgagagcgagcggctgcgccttgag
gcgtaccagaagctctcggccgcgagtggactcacctcggccgatggtgcgatcgaccag
gtgctcgacgagctcaccgaccgctacggcgagccgccgcagcaggtgcacaacctgatc
gccgtctcgcgcctgcgccgcatggcgcagaaagcgggcctgagcgaggtggtcacgatg
ggtggaaacctgcgcgtcgcgagcgccgagctcgccgattcgatccagattcgcctgcag
cgcctttacccgggcgcgcgctatttcgcgcagacgaagtcggtctcggttccactgccc
cggatcgacgggcagggccccgacgacgcgaccctgattgcgtggacgagcggcctgctt
gtggcgattttcggggccgagctcacctcggtggcagcgacagatcgggagagctcggcg
gggcaggagaaatccgcctga
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