Marisediminicola antarctica: BHD05_13590
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Entry
BHD05_13590 CDS
T06401
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mant
Marisediminicola antarctica
Brite
KEGG Orthology (KO) [BR:
mant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BHD05_13590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mant03400
]
BHD05_13590
Enzymes [BR:
mant01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BHD05_13590
DNA repair and recombination proteins [BR:
mant03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BHD05_13590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
PaRep2b
Motif
Other DBs
NCBI-ProteinID:
QHO70526
UniProt:
A0A7L5AKD1
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All DBs
Position
2928057..2930537
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AA seq
826 aa
AA seq
DB search
MSRAEATPSAPTIVTVDGRRIRLTNLDKILYPETGTTKADVLDYYARVADVLIAHAANRP
VTRKRWVHGVGTQEHPEPSFFQKNLDASTPDWVPRTAIAHRERVIEYPLVNDRATLTWLA
QSAALELHVPQWRFGRTGLLRRPDRLVLDLDPGEGAGLAECAEVARLARLILTGMGLDPM
PVTSGSKGIHLYAALDGSQDPEAVSRVARELARALESDHPDLIVSDMKKALRGGKVLVDW
SQNNQNKTTITPYSLRGRRRPTVAAPRTWRELSSPRLAQLDYREVLDRLSRVGDPLARLS
EGHLAALEPTSTRMAHFEMSAESKDRLEKYRSMRDRAKTPEPVPGPDTAATAEDGSSFVI
QEHHARRLHFDFRLEHDGVLVSWALPKGLPADPRKNHLAVQTEDHPLEYGTFEGIIPAGE
YGAGEVTIWDAGTYELEKWREGKEVIVIVHGEKRGTRKYALIHTGDNKWLIHLMDPHRSG
PMAGGPGTDARASSASESGTPRPAVAPMLATLGTLADVKERDDDWAIEMKWDGIRAIATL
GPDAVTFTSRNRNDLTGSYPDLAEIREAVDDSLLERGPAVLDGEIVVFNSRGRPDFSLLQ
TRMNLSGADARTAAARHPARFVVFDLLEANGGSLVRQPWSDRRALLEHGVTARGPLEVSP
VFDGDADAAIAASSELGLEGIVAKKRDGTYAAGRRSRSWIKVKNSRTQEVVIGGWRAGRG
RRAGTVGSLLLGVPGDGLLHYVGRVGSGFSDRALDNLAARFHGLERQESPFDDVPRADES
DAHWLAPTLVGEVEFAEWTSTGRLRHPAWRGWRPDKNAADVVRETT
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgagcagaagccaccccgtcggcgccgacgatcgtcaccgtcgacggccgccgc
atccgcctcaccaacctcgacaagatcctctacccggagaccggcacgacgaaggccgac
gtactcgactactacgcgagggtcgccgacgtactcatcgcccacgcggcgaatcgtcca
gtgacgcgcaagcgctgggtgcatggggtcggcacccaggagcatccggaaccctcgttc
tttcagaagaaccttgacgccagcactcccgactgggtgccgcgcacagcgatagcgcac
cgcgaacgtgtgattgagtatccgctggtcaacgaccgggcgaccctcacctggctggcc
cagtccgccgccctcgagctgcacgttccgcagtggcggttcggcaggaccgggctcctc
cgccgccccgaccggctcgtgctcgatctggaccccggtgagggcgccgggctggcggag
tgcgccgaggtcgctcgtcttgcgcggctgatcctcaccgggatggggctcgatccgatg
ccggtcacgagcggaagcaagggcatccacctctacgccgcgctcgacggcagccaggac
cccgaagctgtgtcgcgggtcgcgcgcgaattggcccgcgctctcgagtccgaccacccc
gacctcatcgtgagcgacatgaagaaggcgttgcggggcggcaaggtgctcgtcgactgg
agccagaacaaccagaacaagaccaccatcactccgtactccctgagagggcgccgacgg
ccgacggtcgcggccccgcgaacctggcgcgagctctcctcaccgaggctcgcccagctc
gactaccgcgaggtgctcgaccggctctcacgtgtcggggacccgctcgcccgcctgagc
gagggccacctggcggcgctcgagccgacgtcgacgaggatggcgcacttcgagatgtcc
gccgaatcgaaggaccggctcgagaagtaccggagcatgcgcgaccgggcgaagacgccg
gagcccgtgccggggcccgacaccgccgcgacggccgaggacggctcgagcttcgtgatc
caggaacaccacgcccgccgcctgcatttcgacttccggctcgagcacgacggggtgctc
gtgagctgggcgctccccaaggggctgcccgccgatccgcgcaagaaccacctcgccgtc
cagaccgaggatcacccgctcgaatacggcaccttcgaggggatcatccccgcgggcgag
tatggggctggggaggtcacgatctgggacgcgggaacctacgaactcgagaagtggcgc
gagggaaaggaggtcatcgtcatcgtgcacggcgagaaacgcggcaccagaaagtacgcg
ctcatccacactggcgacaacaagtggctcatccacctcatggatccccatcgctcgggg
cccatggccggcgggccgggaacggatgcccgcgcgtcgagcgcgtcggaatccgggacg
ccacgcccggccgtcgcgccgatgctagccacgctcggtaccctcgccgacgtcaaggag
cgcgacgacgactgggcgatcgagatgaagtgggacggcatccgcgcgatcgccactctg
gggccggatgccgtgacattcaccagtcgcaaccgcaatgacctgaccgggagctacccc
gacctcgccgagatccgcgaggcggtggacgactcgctcctcgagcggggcccggcggtg
ctcgacggtgagatcgtcgtgttcaattcccggggccgtcccgacttcagcctcctgcag
acccggatgaacctcagcggcgccgacgcgaggaccgcggcagcgcggcatccggcccgc
ttcgtcgtgttcgacctgctcgaggcgaacggcgggtccctcgtccggcaaccctggtcc
gatcgccgggcgctgctcgagcacggtgtcaccgcgcgcggtccgctcgaggtgtcgccc
gtgttcgacggagatgccgatgcggccatcgccgcgagcagcgagctgggcctcgagggc
atcgtcgccaagaaacgcgatgggacctacgctgcgggacgacgctcccgcagctggatc
aaggtgaagaacagccgcacccaggaggtcgtcatcggcgggtggcgtgccggccggggg
cgccgggcgggcacggtcggctcgcttctgctcggggtgcccggcgacggcctcctccac
tacgtcgggcgtgtcggaagcggattcagcgaccgcgccctcgacaacctcgccgcccgc
ttccacgggctggaacgacaggagtccccattcgacgacgtgccgagagccgacgagtcc
gacgcgcactggctcgcccccacactcgtcggagaggtagagttcgccgagtggacgtcg
acaggacgccttcgtcatcccgcctggcgcggatggagaccagacaagaacgcggccgac
gtcgtgcgggaaaccacgtga
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