Mycobacterium avium subsp. paratuberculosis MAP4: MAP4_2872
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Entry
MAP4_2872 CDS
T02662
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mao
Mycobacterium avium subsp. paratuberculosis MAP4
Pathway
mao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MAP4_2872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mao03400
]
MAP4_2872
Enzymes [BR:
mao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MAP4_2872
DNA repair and recombination proteins [BR:
mao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MAP4_2872
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AGL37748
LinkDB
All DBs
Position
complement(3180093..3183755)
Genome browser
AA seq
1220 aa
AA seq
DB search
MTAPGAARPETPIAGLVELALTAPTFQQLIDTAAASPADLSLVGPASTRLFVASALARLG
PLLVVTATGREADDLTAELRGVVGDAVAVFPSWETLPHERLSPGVDTVGARLTVLRRLAH
PDDARLGPPLQVVVTAVRSLLQPMTPQLGLVEPVTLSVGQEIEFEHVIARLVELAYSRVD
MVGRRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIAVDTVISV
PCRELLLTEDVRARAAELAAQHPASEPAITGSVSDMLAKIADGIAVDGMEALLPVLRPGK
QVLLTDQLADRTPVLLCDPEKIRTRAADLIKTGREFLEASWSVAALGTLENQAPIDVEQL
GGSGFAELDEVRAAAVRGGHPWWTLSQLSDESAVELDVRAAPSARGHQHDIDGIFAMLRA
HVSTGGHAAVVAPGTGTAHRVVERLAECDTPAAMLESGAAPRAGVVGVLKGPLHDGIVIP
GANLVVITETDLTGSRVAAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTER
TVGGARREYLVLEYASSKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWANTKT
KARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAEMEDAFGYTETVDQLTAITEVKSD
MEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAG
FPVTVKGLSRFTDAAESRAVIEGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFG
VEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDD
KQVAAALRRELLRDGQAFYVHNRVSSIDRAAARVRELVPEARVVVVAHGQMPEERLERTV
QGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYF
LYPPHAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDL
YVRLVGEAVEAYRAAADGQTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEAYRRLAA
AGSDDEIDAVVEELVDRYGALPEPALRLVAVARLRLLCRAAGITEVSAPSAATVRLSPIT
LPDSAQVRLKRMYPAASYRATTSTVQVPIPRAGGVGAPRLRDVELVQMVANLVTALQGKP
QTDVGTGTPVAAMASEEGRG
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccgggggctgctcgcccagaaaccccgatcgcggggctcgttgaattggcg
ctcaccgcgccgaccttccagcagttgatcgacaccgcggccgcatcgccggccgacctg
agcctggtgggtccagccagcacgcgactgttcgtcgccagtgcgctggcgcggttgggc
cctttgctggtagtcaccgcgaccgggcgcgaagccgacgacctgaccgctgaactgcgc
ggcgtcgtcggcgatgccgtggccgtcttcccgtcctgggagacgctgccgcacgagcgg
ctctcgcccggcgtcgacaccgtcggcgcccggttgacggtgctgcgccggctggcccac
cccgacgacgcgaggctggggccgcccctgcaggtggtggtgaccgcggtccgctcgctg
ctgcagccgatgaccccgcagctgggtctggtggagccggtgacgctgagcgtgggccag
gagatcgaattcgagcacgtgatcgcgcggctggtcgagctggcctacagcagggtcgac
atggtgggccggcgcggcgaattcgccgtgcgcggcggcattctcgacgtcttcccgccg
accgccgagcacccggtgcgggtcgagttctggggtgacgaggtcagcgagatgcggatg
ttctcggtcgccgaccagcgttccatccccgagatcgcggtcgacaccgtgatctcggtg
ccctgccgcgagctgctgctcaccgaggacgtgcgggcccgcgccgcggagctggccgcc
cagcacccggcgagcgagccggccatcaccggcagcgtcagcgacatgctggccaagatc
gccgacggcatcgcggtcgacggcatggaggcgctgctgccggtgctgcggcccggcaag
caggtgctgctgaccgatcagctggccgatcgcaccccggtgctgctgtgcgacccggag
aagatccgcacccgggcggccgacctgatcaagaccggccgcgagttcctggaggcctcc
tggtcggtcgcggcgctggggaccttggagaatcaagcgccgatcgacgtcgagcaactg
ggcggatcgggcttcgccgagctggacgaggtgcgggcggcggcggtccggggcgggcac
ccgtggtggacgctgagccagctgtccgacgagtcggcggtggagctggacgtgcgggcg
gcgccgtcggcgcgcggccatcaacacgacatcgacggcatcttcgcgatgctgcgcgcg
cacgtcagcaccggcggccacgccgccgtcgtcgcgcccggcaccgggaccgcgcaccgg
gtggtggaacggctggccgaatgcgacaccccggccgccatgctggaatccggcgcggcg
ccccgcgccggggtggtcggggtgctcaagggaccgctgcacgacggcatcgttatcccc
ggcgcgaacctggtggtgatcaccgagacggacttgaccggcagccgggtcgccgccgtg
gagggcaagcggctggcggccaagcggcgcaacaccgtcgacccgctggcgctgacggcc
ggcgacctggtggtgcacgaccagcacggcatcggccggttcgtggagatgaccgagcgc
acggtcggcggggcgcggcgcgagtacctggtgctggagtacgcgtcgtccaagcggggc
ggcggatccgacaagctttatgtcccgatggattcgctggaccagctgtcgcgctatgtc
ggcgggcaggcgccggcgctgtccaaactcggcggcagcgactgggccaacaccaagacc
aaggcgcgccgcgcggtgcgcgagatcgccggcgaactggtctcgctgtacgccaagcgg
caggccagccccgggcacgcgttctccccggacaccccgtggcaggccgagatggaggac
gccttcggctacaccgagaccgtcgaccagctgaccgcgatcaccgaggtcaagtcggac
atggaaaaaccgatcccgatggaccgggtgatctgcggcgacgtcggctacggcaagacc
gagatcgcggtgcgggcggcgttcaaggcggtgcaggacggcaagcaggtcgccgtgctg
gtgcccaccacgctgctggccgaccagcatctgcagaccttcaccgaccggatggccggc
ttcccggtgaccgtgaagggcctgtcccggttcaccgacgcggccgaatcccgcgcggtg
atcgaggggctggccgacggctcggtcgacatcgtgatcggcacgcaccggctgctgcag
accggggtgcgctggaaggacctcggcctggtggtggtcgacgaggagcagcggttcggc
gtcgaacacaaggagcacatcaagagcctgcgcacccacgtcgacgtgctgaccatgagc
gccacgccgattcccagaacgctggagatgagcctggccggcatccgcgagatgtcgacc
atcctgaccccgccggaggagcgctacccggtgctgacctacgtcggcccgcacgacgac
aagcaggtggcggcggcgttgcggcgcgagctgctgcgcgacgggcaggccttctacgtg
cacaaccgggtcagctcgatcgaccgggcggcggcccgggtgcgcgagctggtgcccgag
gcgcgggtggtggtggtggcgcacgggcagatgcccgaggagcggctggaacgcaccgtg
caggggttctggaaccgcgagtacgacatcctggtgtgcaccacgatcgtggagacaggg
ctggacatctccaacgccaacacgctgatcgtcgagcgcgccgacacgttcgggctctcg
cagctgcaccagctgcgcggccgggtggggcgcagccgcgaacggggttacgcctacttc
ctgtatccgccgcacgccccgctgaccgagacggcgtatgaccggctggccaccatcgcc
cagaacaacgagctcggcgcgggcatggcggtcgcgctgaaggacctggagatccgcggc
gcgggcaacgtgctgggggtggagcagtccgggcacgtcgccggcgtcggcttcgacttg
tatgtgcggctggtgggcgaggccgtcgaggcgtaccgggccgcggcggacggccagacc
gtcaccaccgccgaggagcccaaggacgtgcggatcgacctgccggtggacgcgcacctg
ccgccggactacatcgccagcgatcggctgcggctggaggcgtatcggcggctggccgcc
gcgggctcggacgacgagatcgacgcggtggtcgaggaactcgtcgaccgctacggggcg
ctgcccgaaccggccctgcggctggtggcggtcgcccggctgcggctgctgtgccgcgcc
gccggcatcaccgaggtgtcggcgccgtcggcggccaccgtgcggctgtcgccgatcacg
ctgcccgattcggcccaggtgcggctgaagcggatgtatccggccgccagctaccgggcc
accacgtcgaccgtgcaggttcccatcccgcgcgccggcggggtgggcgcgccgcggctg
cgtgacgtcgagttggtgcagatggtggccaacctggtgacggcgctgcagggtaaaccg
cagacggatgtcggcaccggcacgccggtggcggcgatggccagtgaggaggggcgcggg
tga
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integrated database retrieval system
