Marinobacter nauticus VT8: Maqu_1933
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Entry
Maqu_1933 CDS
T00454
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
maq
Marinobacter nauticus VT8
Pathway
maq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Maqu_1933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maq03400
]
Maqu_1933
Enzymes [BR:
maq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Maqu_1933
DNA repair and recombination proteins [BR:
maq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Maqu_1933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABM19014
UniProt:
A1U1Z5
LinkDB
All DBs
Position
2156439..2159960
Genome browser
AA seq
1173 aa
AA seq
DB search
MTKGQAHAPLIAPAAPEKAADHRKWGQLNGCADALAICESARAHKGLTLVITQSTSEAIQ
LEQSIRFFLGLPTDEDGAIITSDGIELLSLPDWETLPYDLFSPHQDITSRRIRSLHRLPG
TRHGILVVPARTLMHRLAPPSYLQGNTLLLEVGQTLDIDSWRMQLEAAGYHHTDNVYEHG
EYAVRGAILDIYPMGSNLPYRIDLFDDEIETLRTFDPETQRSIDKTERIELLPANEFPWH
KEARSGFRNRWFEYFPNADKDAPVYQDVTHGITPPGIEYYLPLFFDATATLFDYLPGNTL
VFTANGLNDAVNAFDAETRARYEDRRHDRLRPILPPTELFLQPDEVFGQLKHHPRITCSS
QPEDGAGASNCGTESLPDVAMDGRAADPAGRLKRFIQEFHGRILICAESSGRREALIDNL
ADHKLKLATVQSWSEFLENESTTLAITIAPLEQGMVLPDQNLALITETALFGERVLQRRR
RQKPTETDDAGYRDLSELRIGAPVVHIDHGVGRYKGLETLTAGGQSDEFLTLEYAGGSKL
YVPVSSLHLISRYAGTDEEHAPLHKLGTERWSNAKQKALEKIRDTAAELLDVYARREARK
GFQFEDPKEAYRAFAAGFPFEETPDQQVAIESVFEDMTSERPMDRLVCGDVGFGKTEVAM
RAAFLATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTPVTVELLSRFRSGSQTSKAITAI
EEGKADIVIGTHKLLQGDINFKNLGLVIIDEEHRFGVQQKEKLKSLRAEVDMLTLTATPI
PRTLNMAMGHLRDLSIIATPPARRLSVKTFVRQRDDAMVKEAILREILRGGQVYFLHNDV
ATIEKTAEDLRKLIPEARVGVAHGQMRERQLEQIMSDFYHKRFNVLVCTTIVETGIDIPS
ANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAISADARKRLDAISESQDL
GAGFMLATHDLEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIRDGRTPNAELPLS
HGTEMNLRIPALIPDDYLPDVHNRLMLYKRIASVKDREALKELQVEMIDRFGLLPPPAKN
LMRQAQLRLQAETLGIVKVDAGKEWVRLEFGATTPVDPLELVKKVQSAPDRYRLEGANSF
RFRLNDDSTDGKLDAIAAMLEELAPDKAPAKAS
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaggccaggcccacgccccgcttatcgcccccgctgcccctgaaaaggctgcc
gaccacagaaaatgggggcaactgaatggctgtgccgacgccctggccatctgcgaaagc
gcccgcgcccacaaaggtctgacactggtcatcactcaaagtaccagcgaagccatccag
ctggagcaatccatccggtttttcctggggctgcccacggatgaagacggcgccatcatt
acctccgatggcattgagctattgtcgcttccggactgggaaacactgccctacgatctg
ttttcgccacaccaggacattacctcgaggcggattcgctccctgcaccggttacccggc
acacgccacggcattctcgtagtaccggcgcgcaccctgatgcaccggcttgcccccccg
agctatctgcagggcaacaccctgctgctggaagtgggccagaccctggatatcgacagc
tggcgaatgcaactggaggcagccggttatcatcataccgacaacgtgtatgaacacggc
gagtatgcggtacgaggggccatcctcgacatttatcccatgggctctaacctgccctac
cgcattgatctgttcgatgacgaaatcgaaaccctccggacctttgacccggaaacccag
agatccatcgataaaaccgaacgcatcgaacttctgccggccaacgaatttccctggcac
aaggaagcccgctcaggctttcgcaatcgctggtttgaatatttccccaatgccgacaaa
gacgcgccggtttaccaggatgttacccacggcatcacaccgcctggcattgagtactat
cttccactgtttttcgatgcaaccgccacgttatttgattatctgccgggcaacactctg
gtgtttactgccaacggcctcaatgatgccgtcaatgcctttgatgcggaaacgcgggcc
cgttacgaagaccgccgccacgatcgactgcgccctattctgccccccaccgagctgttt
ctgcagccggatgaagtgttcgggcaactcaaacaccacccgcgcattacctgcagcagt
cagcccgaagacggcgcgggtgccagcaactgcggtaccgaatctctcccggatgtcgcc
atggacgggcgcgccgctgatccggcagggcgcctcaaacggttcatccaggagttccac
gggcgcatcctgatctgtgctgaatcgtccgggcgccgggaggcgctgatcgacaacctg
gccgatcacaagctcaagctggcaaccgtgcagagctggtcggaattcctcgaaaacgag
agcaccactctggccatcaccattgccccactggaacagggcatggtattgcccgaccag
aatctggcactgattaccgaaacggcgttgtttggcgagcgggtgctgcagcgtcgccgg
cgccagaaaccaaccgaaaccgacgatgccggctaccgggacctgtctgaactgagaatt
ggcgcaccggtcgtgcatatcgaccatggcgtggggcgctacaaggggctggagacactc
accgccggcggccaatccgacgaatttctgaccctggaatacgccggcggctccaaactc
tatgtaccggtgtccagcctgcacctgatttcccgttacgccggcaccgatgaggaacac
gcaccgctccacaagctcggaacggagcgctggagcaacgccaagcaaaaagcgctggaa
aagatccgcgacaccgcagcagaactgctggatgtttacgcccgccgggaagcccggaaa
ggcttccagtttgaagacccgaaagaggcctatcgggcctttgctgccggattcccgttc
gaggagacgccggaccagcaggtggccatcgaatcggtgttcgaggatatgaccagcgaa
cgcccgatggaccgactggtatgcggcgatgtcggcttcggtaaaaccgaagtcgccatg
cgcgcagcttttctggccacctggtctggcaaacaggtggccgttctggtacccactact
cttctggcccagcaacattacgagtcgttccgtgaccggttctcggatacgccggtaact
gtagagcttctgagtcgcttccgcagcggcagccagaccagcaaggccatcactgccata
gaggaaggcaaggcagatatcgtcattggcacccacaagcttctgcaaggcgatatcaac
ttcaagaatctggggctggtgattatcgacgaagaacaccggtttggcgttcagcagaag
gaaaaactgaaatccctgcgggccgaggtggatatgctgaccctcaccgccacaccgatt
cccagaaccctgaacatggccatgggccacctgcgcgacctgtccattatcgccacccca
ccagcccgccggctgtcggtgaaaacctttgtgcgccagcgcgacgacgccatggtgaaa
gaagcgattctgcgggaaatcctgcggggcggtcaggtctatttcctgcacaacgatgtc
gccaccatcgagaaaaccgcggaagatctgcgcaaactgattccggaggcgcgggtgggt
gtggcacacggccagatgcgcgagcgccagctggaacagatcatgtcggatttctaccac
aagcgtttcaacgtactggtgtgcaccactattgtggaaaccggcatcgacatccccagc
gccaacaccattattattgaacgggcagacaaatttggcctggcgcagctgcaccagctt
cggggtcgcgtgggcaggtctcatcaccaggcgtacgcctatctgctgacaccaccgcca
aaggccatttccgccgatgccaggaagcgactggatgcgatttccgaatcccaggacctg
ggcgcaggcttcatgctggccacccacgacctggaaatccggggcgctggcgagctgctg
ggtgaagaacagagcggtcagatcgaaagcatcggctttaccctctacatgcagctgctg
gacgaagccgtaaaagcgattcgcgacggccgcacgcccaacgccgagctgcctctcagc
cacggcaccgaaatgaacctgcgcattccggccctgattcccgacgactacctgccagat
gtccacaaccgcctgatgctgtacaagcgtattgccagcgtgaaggatcgtgaggcatta
aaagaacttcaggttgagatgattgaccgcttcggattattaccgcccccggccaagaac
ctcatgcgccaggcacagctacgcttgcaggcagagactctgggcatcgtgaaagtggat
gccggcaaggaatgggtgcggcttgagttcggggcaacgacaccggtcgaccctctcgaa
ctggttaaaaaagtgcaatccgctccggatcgataccggctcgaaggcgccaacagcttt
cgcttccggctgaatgatgactcaaccgatggtaaactcgacgccatcgcagcgatgctc
gaagaactggcgcccgacaaggccccggcaaaggcatcatga
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