Marinilongibacter aquaticus: LAG90_11755
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Entry
LAG90_11755 CDS
T08477
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
maqa
Marinilongibacter aquaticus
Pathway
maqa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maqa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LAG90_11755 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maqa03400
]
LAG90_11755 (mfd)
Enzymes [BR:
maqa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAG90_11755 (mfd)
DNA repair and recombination proteins [BR:
maqa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LAG90_11755 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SBP_bac_3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UBM57493
LinkDB
All DBs
Position
2718538..2721891
Genome browser
AA seq
1117 aa
AA seq
DB search
MLAVDFLKIFREDSFVKHVHETVRTHDKSQIEGIHGSLDAVLVASAYSNSPFSALFVLGD
KEDAAYFHNDLKNLLGDEHVFFFPASYKRLFEFQDVENANVLQRAELINRLNQGEKNPLI
VCYSEALAEKVINKKSLVANTLRLRTGESLDMNFVTELLVSYDFEKTDFVYEPGQFSVRG
GIVDIFSYASDQPLRIELFGDEIDTMRFFDAETQLSIKQVEEATIIPDVEHKLKHESRES
FFSFLPTDTQIWLKDLNFTLERSAESFKRYAESIDSLVEKSGDIKVVLDASESFLDEKNL
LKEIEKFKNVEFGNHFFFNKAERVQYLSKSQPSFNKEFNLLIDDLNDRQSHGYSTFICSD
QSKQLKRLRRIFEEIDPENKFIEGEFSLSQGFIDQQTKVVCYTDHQIFERYHRYQIKEKF
TKSKAMTLKELQSLKPGDYVTHIDYGIGRFAGMESVDVSGNKQEAIRLIYKDNDLLYINV
HSLHKIAKYSGKEGTPPSMSKLGTGEWENKKKKVKKQVKDIAHELIALYAKRREAPGFAY
SPDGYLQIELESSFLYEDTPDQASATGQVKEDMEKPYPMDRLVCGDVGFGKTEVAIRSAF
KAATDGKQVAILVPTTILAMQHYKTFKERLEKMPVTVDYINRFKSTTDTNKTLKDLKAGK
VDIVIGTHKLLNKKIEFKDLGLLVIDEEQKFGVKAKDRIKELRHNVDVLTLTATPIPRTL
HFSLMGARDLSVISTPPPNRQPVTTEVKVWQEEVVRDAISYELRRGGQVFFVHNRVKDIE
SIANIILNLVPDAKIGVAHGQMEGEKLEKIMMAFIEGDLDILISTNIIESGLDIPNANTI
IINHAHMFGMSDLHQMRGRVGRSNKKAFCYLLTPPLSGLSRDARKRLQTLEEFSDLGDGF
KVAMRDLDIRGAGNLLGSEQSGFVNDLGYELYHKILDDAVKELKEKEFKSLFEKELAAEE
FSVDDCQIETDQEILIPEDYISSISERLSVYNSIDALKDQDELNTFKHSLIDRFGKLPES
VKSLFEIVRVRWKAQKLGFEKLTWKNNILKGYFVSSKHEAYYQADKFGLILDFVKLNSKL
CSLKQVKDKLILVIKPASSIDEIDRIFGSILEHIEKK
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
gtgctagcagtagattttttgaagatatttcgtgaagacagctttgtaaagcatgtgcac
gaaaccgtgcgaacgcacgacaaaagccaaattgagggtatccatggcagtttagatgcc
gttttggtggcttccgcatattccaattcgccattcagtgccctttttgtcttgggtgac
aaagaagacgccgcctatttccacaacgacctcaaaaacctgctgggcgacgaacacgtg
ttctttttccccgcttcgtacaaacgcttgtttgagtttcaagatgtggaaaatgcgaac
gtgcttcagcgtgccgaactgataaaccgcctgaaccaaggtgaaaaaaatccgctcatt
gtatgctattccgaagctctggccgaaaaggttatcaacaaaaaaagcttggtggccaat
actttgcgattgagaacgggtgaaagtttagacatgaactttgtcaccgaattgctggta
tcgtacgatttcgaaaaaacagatttcgtctatgaacctgggcagttttctgttcgtggc
ggcattgtcgacattttctcatatgcctcggatcaaccgcttcgaattgaactttttggt
gatgaaatcgacaccatgcgatttttcgatgccgaaacgcaactctcgataaaacaggtt
gaagaagccacgattattcccgatgtggaacataaactgaaacacgaaagccgcgaatct
tttttcagctttctgcccacagacacacaaatttggctcaaagacctgaactttaccctt
gagcgaagtgccgaaagtttcaagcgatatgcagaatccatagattctttggtggagaag
agcggcgatatcaaggtggtactcgatgcttccgaaagctttctcgacgaaaaaaacctg
ttgaaagaaatagaaaaattcaagaatgtcgaattcggcaaccacttcttcttcaacaaa
gctgaacgtgttcagtacctctctaaatcacagccttctttcaataaagaattcaatttg
ttgatcgacgacctgaacgaccgccaaagccacggctacagcacattcatttgttcagac
cagagcaaacagctgaaacgtttgagaaggatttttgaagaaatagatcccgaaaacaaa
tttatagaaggcgagttctctctttctcagggttttatcgatcagcagacaaaagtggtt
tgttataccgatcatcaaatattcgaacgctatcatcgctaccaaataaaagagaagttc
acgaagtcgaaagccatgactttgaaagagcttcaatctttgaaaccgggcgactacgtc
acgcacattgattacggtatcggtcgattcgcgggcatggaaagtgtggatgtttcagga
aacaaacaggaagccatccggctaatttataaagacaacgacctcttgtatatcaatgtg
cactccttgcacaaaatcgccaagtattctggcaaagagggcaccccgccgagcatgagc
aaattgggtactggcgagtgggaaaacaaaaagaaaaaagttaaaaagcaggttaaggac
attgcccatgaactgatcgccctgtatgccaaacgccgagaagctcctggttttgcctac
agtccagacggttatcttcaaatcgaattggaatcttcattcctttatgaagatacgccc
gatcaggcctcagccacaggacaggtgaaagaagacatggaaaagccataccctatggac
aggctggtctgtggcgatgtgggatttggaaaaaccgaggtggccattcgttcggctttc
aaggcagctacagatggcaaacaggtagccattttggtgcccacaaccattctggccatg
cagcattacaaaacctttaaggaacgtctcgaaaaaatgcccgtgactgtcgattacatc
aatcgtttcaaatcgaccacggatacgaataaaacactgaaagacttaaaagccgggaag
gtggatattgttatcggcacccacaaactgttgaacaagaaaatcgaattcaaagacctc
gggcttctcgtcatcgatgaagagcaaaagtttggcgtaaaagccaaagaccgtataaag
gaattgcgacacaatgtagacgtgctgacactcacggccacgcccattccacgcaccttg
catttctcattgatgggagccagagacctttctgtgatatctactccaccgccaaaccga
caaccggtcactaccgaagtgaaagtgtggcaggaagaggtggtacgcgatgctatttcg
tatgaattgcgaagaggcggacaggtcttctttgtgcacaaccgtgtaaaagacattgaa
agcatcgccaatatcattctcaatttggtgcccgatgccaaaattggtgttgctcatggg
caaatggaaggcgaaaaactggagaaaatcatgatggcctttatcgaaggcgatctggat
attctcatctctacaaatatcatagaatcgggcctggatatacccaatgccaataccatc
atcatcaaccatgcccatatgttcggcatgtccgatctgcatcaaatgcgaggtagggta
gggcgatcgaataaaaaagctttttgttatttgcttactccgcccttgtctggcctttct
cgcgatgcacgcaagcgtttgcaaactttggaggagttttcagatttgggcgacggcttt
aaggttgccatgcgggatttggacattcgtggggcaggaaacctattgggctctgaacaa
agcggtttcgtgaacgatttgggttatgagctttatcacaaaatactcgatgatgccgta
aaagaactgaaagagaaggagttcaaatcactttttgagaaagaactcgccgccgaagag
ttcagtgtggacgattgccaaatagaaacggaccaagaaattttaattccagaggattac
atcagcagcatttccgaacgtttatcggtttacaacagcatcgatgccttgaaggatcaa
gatgaattgaacactttcaaacactcgcttatcgaccgattcggaaagctgcctgaaagc
gtaaaaagcctcttcgagattgtgcgagtacgttggaaagcccaaaaacttggctttgaa
aaacttacatggaaaaataatatcctaaaaggctatttcgtttcctcaaagcacgaagcc
tattatcaggccgataaatttggtttaattctcgatttcgtaaaattgaattccaagctg
tgcagtttgaaacaagtaaaagataagctaatattggtgattaaacctgcttcatccatc
gatgagattgaccgaattttcggttcgattttggagcatatagagaagaaataa
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