KEGG   Methanofollis aquaemaris: RJ40_09325
Entry
RJ40_09325        CDS       T08618                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
maqe  Methanofollis aquaemaris
Pathway
maqe03030  DNA replication
maqe03410  Base excision repair
maqe03420  Nucleotide excision repair
maqe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:maqe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RJ40_09325
   03410 Base excision repair
    RJ40_09325
   03420 Nucleotide excision repair
    RJ40_09325
   03430 Mismatch repair
    RJ40_09325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:maqe03032]
    RJ40_09325
   03400 DNA repair and recombination proteins [BR:maqe03400]
    RJ40_09325
Enzymes [BR:maqe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RJ40_09325
    6.5.1.6  DNA ligase (ATP or NAD+)
     RJ40_09325
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     RJ40_09325
DNA replication proteins [BR:maqe03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    RJ40_09325
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     RJ40_09325
DNA repair and recombination proteins [BR:maqe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     RJ40_09325
   NER (nucleotide excision repair)
    Other NER factors
     RJ40_09325
   MMR (mismatch excision repair)
    Other MMR factors
     RJ40_09325
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase CysG_dimeriser DUF2850 DDE_Tnp_1_3
Other DBs
NCBI-ProteinID: QSZ67693
UniProt: A0A8A3S6X8
LinkDB
Position
1960771..1962411
AA seq 546 aa
MEFAAFSRVCEQLEGMSGRLEMIDLVASILPSLSDEELPIFVRFVMGRVFPDWSPQKLGI
GPNLLYEAIGYVAGRKKADVVAAVNETGDVGCAVERLLATKSQTSFFVEPPTLGGVYGDL
TRIAMTDGNRSQREKVRIIKGLLGNVGALEGRYLSRLLLEELRIGVGEGNVRDAIAGAFG
VDAALVAHAHQALNDLGEVALLARTGAPALQDVHIAPFRPVKMMLAQQGTIAGMVEDHGA
VAVEYKYDGTRFQFHKVGDECRMYSRRLEEVTGAVPDVIERLCAATTHDVILDGEVIAVR
DGRPRPFQFVLRRFRRKHEVEAAMEEVELVPNVFDILYLDGETLIDRPLSDRRAVLEEML
SGYVAPQWVNDDTDALETIYQEALDAGHEGVMVKTRGAAYTPGVRGKNWIKVKPAVDTID
LAVVGAEWGEGRRAHLFGSFLLACQDEGGDLLPVGKVATGLSDEDLAFIFRHLKEFVIAE
KGKEIVLEPKAVFEVGYAEVQESQNYASGYALRFPRFVRLREDKSVDEIETVGGVAARYE
QQFKSL
NT seq 1641 nt   +upstreamnt  +downstreamnt
atggagtttgcagcattttcgcgggtttgcgagcaactcgaagggatgagcgggaggctt
gagatgatcgacctcgtcgcctccatcctcccgtccctctcagacgaggaacttcccata
tttgtcaggtttgtgatggggcgggtcttccctgactggagcccccagaaactcggcatc
ggtccgaacctcctgtacgaggcgatcggctatgtcgcagggaggaagaaggccgacgtc
gtcgccgcggtcaatgagaccggggacgtcgggtgtgccgtcgagcggctcctcgccacc
aagtcccagacctcgttctttgtcgaaccccccaccctcggtggagtctatggcgacctc
accaggatcgcaatgaccgacgggaaccgttcgcagcgggagaaggtcaggatcatcaag
gggctccttggcaatgtgggagcccttgaagggcggtatctctcccgtctcctccttgaa
gaactgcggatcggtgtcggtgaaggaaatgtgcgggatgcgatcgccggggccttcggc
gtcgatgccgccctcgtcgcccatgcacaccaggccctcaacgacctcggagaggtcgct
cttctggcgcgcaccggcgccccggccctgcaggacgtgcacatcgcacccttcagaccg
gtgaagatgatgcttgctcagcaggggacgatcgccgggatggtcgaggaccatggcgcg
gtcgcggtggagtacaagtacgacggcaccaggttccagtttcacaaagtcggggatgag
tgcaggatgtactcgcgcaggcttgaagaggtcaccggggcggtacccgatgtgatcgag
agactctgcgccgcgacgacccacgacgtgatccttgacggcgaggtgattgcggtcaga
gatggtcgtccccgccccttccagttcgtgctcagacgcttcaggcggaagcacgaggtc
gaggcggcgatggaggaggtcgaactcgtcccgaatgttttcgacatcctgtacctcgac
ggagagacgctcatcgatcgccctctctctgaccggcgtgcggtgctggaggagatgctt
tccgggtatgtcgccccgcagtgggtgaacgacgataccgatgccctcgagacgatctat
caggaggctctggacgcggggcacgagggcgtgatggtcaagacgcgcggggccgcctac
accccgggcgtacgcggcaagaactggatcaaggtcaaacctgcggtcgacaccatcgac
cttgcggtggtcggtgcggagtggggggaagggcggcgcgcccatctcttcggttcgttc
cttcttgcctgccaggacgaaggcggcgatctcctcccggtcgggaaggtggcgaccggg
ttgtcggacgaggatcttgccttcatcttcaggcatctcaaggagtttgtcatcgcagaa
aagggcaaggagatcgttcttgagccgaaggccgtcttcgaggtcgggtatgccgaggtc
caggagagccagaactatgcgagcggttatgccctcaggttcccgcgctttgtcaggttg
cgtgaggacaagagtgtggacgagatcgagacggtgggcggggtggccgcccggtacgag
cagcagttcaagtccttatga

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