Flagellimonas marinaquae: LDL77_10560
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Entry
LDL77_10560 CDS
T07803
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
maqi
Flagellimonas marinaquae
Pathway
maqi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LDL77_10560 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maqi03400
]
LDL77_10560 (mfd)
Enzymes [BR:
maqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LDL77_10560 (mfd)
DNA repair and recombination proteins [BR:
maqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LDL77_10560 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
UBZ12337
LinkDB
All DBs
Position
complement(2338374..2341808)
Genome browser
AA seq
1144 aa
AA seq
DB search
MTKTPISQLFEQSPQLGKLRDCIAQTRDEQSSASRKINIKGLMGSSLSFVISEAFKSADS
PFLLILNDKEEAAYHLNDLEQLIGEKDVLFYPGSYRRPYQIEETDNANILLRAEVLNRIN
SRRKPAVIVTYPDALFEKVVTRKELDKNTQKLKIGDEISLDFLNEVLFEYQFKRVDFVTE
PGEFSVRGGIVDVFSFSHDEPYRIEFFGDEVDSIRTFDVETQLSTDKVKKITIIPNVENK
FTEEIRESFLKYISANTVVFAKNPALIYDRIDSFFEKAEESFAKLSKEIKHAKPKELFLD
SALLKEQLNDYLCIEIGASAPLSHQNLDNIVTEQSRSDEIQFNTKPQPSFNKKFDLLIEN
LNDNRDAGYSNYIFCSTEQQAKRFHDIFDEVDETVHYQTIIFPLFQGFVDQDLKIACYTD
HQIFERYHKFHLKNGYAKKQAITLKELNKLEIGDYVTHIDHGIGKFGGLQKIDVEGKKQE
AIKLIYGDRDILYVSIHSLHKISKYNGKDGAPPKIFKLGSAAWKKLKQKTKARVKKIAFD
LIKVYAKRRLEKGFQYAPDSYLQHELEASFLYEDTPDQEKSTQDVKKDMESERPMDRLIC
GDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHDRTFKERLKEMPVTVDYLNRFR
TAKEKRETLENLENGKVDIIIGTHQLVNKNVKFKDLGLLIVDEEQKFGVSVKEKLRSIKE
NVDVLTLTATPIPRTLQFSLMAARDLSVINTPPPNRYPIESQVIRLNEEIIRDAISYEIQ
RGGQVFFIHNRIENIKEVAGMLQRLVPDAKIGIGHGQMEGKKLENLMLAFMNGEFDVLVS
TTIIESGLDVTNANTIFIHNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYEVMTTEAR
KRIEALEQFTDLGSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFETYQKILSEAIDELK
ENEFKDLYDEVEGDKEKVYVKEMQLDTDFELLFPDDYINNITERLNLYTQLNNVEDEEGL
QKFEAQLVDRFGELPEPAVDLMNSVRIKWIATHIGLEKVIMKKGKFIGYFIADQQSSFYQ
SAVFTQVLQYAQTHPQLVKLKEKQTRNGLRLLLVFERITSVDKALKMLEPFTPLKSPQGN
NVSA
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaaaaccccgatttcacaactttttgaacagtctccccaactcgggaaactgagg
gactgtattgcccaaacgcgagacgagcaatcgtcggcatcacgaaaaatcaacatcaaa
ggactgatgggctcctcactctcctttgtgatttcagaggctttcaagtctgccgactct
ccctttttgctgattttaaacgataaggaggaagccgcctatcatttgaacgatttggaa
caactgatcggggagaaagacgtccttttttatccaggcagttaccgaaggccttatcaa
atcgaggaaacggacaatgcgaacatactgctacgtgccgaagtgctcaaccgtatcaat
tccagaagaaaacctgcggtaatcgttacctatcccgatgcgctttttgaaaaagtagtc
acgcgaaaggaactggacaagaacacccaaaagctgaaaataggcgatgagatctctttg
gattttttgaacgaagtgttgttcgaatatcagttcaagcgggtggattttgtaacggaa
ccaggcgagttttcggtacggggcggaattgttgacgtattttcattctcgcacgatgaa
ccttaccgtatcgaattttttggggatgaagtggacagtatccgaacttttgatgtggag
acccaactttccacggacaaagtgaagaaaatcaccattataccaaacgtggagaacaag
ttcacggaggaaattcgggaaagcttcttaaaatatatttctgccaataccgtggtcttt
gccaagaaccctgctttgatctacgaccgcatcgattccttttttgaaaaagcggaggag
agttttgccaaattgagcaaagagatcaaacacgccaagcccaaagaactctttttggat
tcagctttgctgaaagagcagttgaatgattatttgtgcattgagattggggcttcggct
ccgctcagccaccaaaatttagacaatatcgtcactgagcaaagtcgaagtgacgaaatc
cagttcaacaccaaaccgcaaccttccttcaacaaaaagttcgacctgctcattgaaaac
ctcaacgacaatcgggatgcagggtacagcaactatattttctgttccacggagcagcag
gccaagcgttttcacgacatttttgatgaagtggatgaaacggtgcactaccagaccatc
atttttccgttgttccaaggttttgtcgaccaggatttaaagattgcctgctacactgac
catcaaatttttgaacgctaccataagttccatctgaaaaatggctatgccaaaaagcag
gccatcacgttgaaggaactcaacaaactggaaattggcgattatgtgacccacattgat
cacggtatcggcaagttcggcggattacaaaaaattgatgtggagggcaaaaaacaggaa
gccatcaaactgatttatggtgaccgagatatcctctatgtcagcatccactccctgcat
aaaatatccaaatataacggtaaggacggggcacctcccaaaatattcaaactgggttcc
gcggcctggaaaaaactgaagcaaaagaccaaggcaagggtaaaaaagattgctttcgac
cttataaaggtctacgcgaaacgaagattggaaaaaggttttcaatatgctcccgacagc
tatttgcaacacgaactggaggcatctttcctttacgaggacactccagaccaggaaaaa
agcacccaagatgtaaaaaaggatatggagagcgaacgcccaatggatcgcttgatctgt
ggtgacgttggttttgggaaaacggaagtggctattcgtgccgcattcaaggccgtggac
aatggcaaacaggtggctgttttggtgccgaccaccattttggcctttcagcatgacaga
acttttaaggaacgattgaaggagatgcccgttacggtggattacctcaaccgcttccgt
accgccaaggagaaacgcgagaccttggagaatttggagaatggaaaagtggacatcatt
attggaacgcaccagttggtgaacaaaaatgtgaaattcaaggatttgggcttgctcatt
gtggacgaggaacaaaaattcggggtttcggtcaaggaaaagctacgttccatcaaagaa
aatgtggatgtgcttaccttaacggccactcccattcctcgaacgcttcaatttagtttg
atggcggcgcgtgacctttccgtgatcaacactccgccacccaaccgctaccccatcgag
agccaggtaattcgattgaacgaagaaattatccgagatgccatttcatacgaaatacaa
cggggcggtcaggtatttttcatccataatcgcatcgagaacatcaaggaggtggctgga
atgctacaacgtttggtgcccgatgccaagattggaatcggacacggacaaatggagggc
aagaaactggaaaaccttatgcttgcctttatgaacggagagttcgatgttttggtctct
accaccatcatagaaagtggattggatgtgaccaacgccaacaccatttttatccataat
gccaataattttggattgagcgacctccaccagatgcgagggcgtgtgggccgaagcaat
aaaaaagccttttgttactttatcacgccaccctatgaggtaatgaccaccgaggcccga
aaacgcatcgaggccttggaacagtttaccgatttgggtagtggttttaatattgcgatg
aaagatttggaaattcggggtgctggtgaccttttgggcggtgagcagagtggattcatc
aacgaaatcggattcgagacctatcaaaaaatactgtccgaagccattgacgagctcaag
gaaaatgagttcaaggatctgtatgatgaagttgagggggataaggaaaaggtatatgtg
aaggagatgcagctcgacacggattttgaactgctcttccctgatgattacatcaacaac
atcaccgaacgcctgaacctctacacccaattgaacaacgtggaggacgaggaaggccta
caaaaatttgaagcgcaattggtagaccgttttggtgaactgcccgagcctgccgttgat
ttgatgaactccgttcgtattaaatggatcgccacgcatattggtctggaaaaggtaatc
atgaaaaaaggaaagttcattggctattttattgccgatcagcaatccagtttttaccaa
agtgcagttttcacccaagtattgcaatacgcacaaacacatccgcaattggtaaagctc
aaggaaaaacagacccgaaatggcctgcgcctgttattggtatttgaaagaatcaccagc
gtggataaggcgttgaagatgttggagccttttactcccctaaagtcccctcaagggaac
aatgtttctgcataa
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