Methylobacterium aquaticum: Maq22A_c18420
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Entry
Maq22A_c18420 CDS
T04311
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
maqu
Methylobacterium aquaticum
Pathway
maqu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Maq22A_c18420 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maqu03400
]
Maq22A_c18420 (mfd)
Enzymes [BR:
maqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Maq22A_c18420 (mfd)
DNA repair and recombination proteins [BR:
maqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Maq22A_c18420 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
SecA_DEAD
UB2H
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAQ46774
UniProt:
A0A0C6FNG8
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All DBs
Position
3541944..3545558
Genome browser
AA seq
1204 aa
AA seq
DB search
MAKPAPKGSSQPPAPPAPVKKPAAARFALPKSAALTKAVEALKAGDSATLARVPDGFDAL
VVADLARALSQVSEGPAVLVHVARDGTRSAAFASALAFVAPEIEVMSVPAWDCQPYDRIS
PNAAIAAQRMTALSRLSRTRSSAEKPRILTTTVNALVQRVPPKSRIAVETFSAAPGNALD
TNQIVAWLEANGFLRTGTVRDTGEYAVRGGIIDLSPPGLPNPVRLDFFGDTLESIRAFDP
ETQRTIGQLRSLDLVPMSEVQLTTETIRRFRQGYVTTFGAATRDDRLYETISEGRRYAGL
EHWMPLFYDHLDTLFDYVAGVPLILDHQVDDAVAERLSQVQEYYDARCEALKERQSDTAP
YKPLKPDALYLSPNEWAKRIEGATVARLAPFDVPKVSGRKLIDGEGVPGRSFAPERAKEG
VNVFDAAVTHIRELQGTGHHVVLAAWSEGSRDRLCGVLTEHGLPKPKTITRLSDILAMKR
GQDLGVAVWGLESGFSAGQLAVVAEGDILGDRLVRPKRKAKRPQDVILEVQALAPGDLVV
HADHGIGRFVGLKTVTAAGAPHDCLEIQYSGGLLLLPVENIELLTRYGSEDADVALDKLG
GGAWQARKAKLKRRIMEMAGALIKVAAERFLKSAPKMAPPEGTYGEFAARFPYEETEDQE
AAIAATLGDLTSGRPMDRLVCGDVGFGKTEVALRAAFVTALSGKQVAVVVPTTLLARQHA
RTFEARFKGLPVNVAQASRFVSNAELKKVREGLADGSVDIVVGTHALLAKNIAFKDLGLI
IIDEEQHFGVSHKERLKALKAEVHVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLAV
RTFVMPFDPLSIREALLRERYRGGQAFYVVPRIEHLEEVKRFLDREVPEAKVAVAHGQMA
AGQLEDVMTAFYEGQYDILLATTIVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRS
KARAYALFTTPEGKPLTVQAERRLSVLQSLDTLGAGFQLASHDLDIRGAGNLLGDEQSGH
VKEVGYELYQQMLESAVAALKSGNALPTDEQWSPTIALGAPVTMPEEYVADLSVRLGLYR
RLATLENDRELESFGAELIDRFGPLPPEVEELLKIVTIKILCRQTNVEKVEAGPKGIVMH
FRDRSFANPAKLAGYIADQRSFAKVRPDMSVVFIRDLATVAERLKETTAILRDLVKLITR
KKAA
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccgcccccaaaggctcctcccagccccccgccccgcccgcgccggtcaag
aagcccgcggccgcccgtttcgccctgccgaaatccgcggcgctgaccaaggccgtggag
gcgctgaaggccggcgacagcgcgacgctggcgcgggtgccggacgggttcgacgccctg
gtggtggccgacctcgcccgggccctgtcgcaggtctccgaggggccggcggtcctggtc
cacgtcgcccgcgacggcacccgctcggcggccttcgccagcgcgctcgccttcgtggcg
cccgagatcgaggtgatgagcgtcccggcctgggactgccagccctacgacaggatctcg
cccaacgcggccatcgcggcgcagcggatgaccgctctgtcgcggctttcccgcacccgt
tcctcggccgagaagccgcgcatcctcaccaccacggtcaacgccctggtgcaaagggtg
ccgcccaaatcccgcatcgccgtcgagaccttctcggcggcgccgggcaatgcgctcgac
accaaccagatcgtcgcctggctcgaggccaacggcttcctgcgcaccggcaccgtgcgc
gacaccggggagtacgcggtgcgcggcggcatcatcgacctgtcgccgccgggactgccg
aacccggtccgcctcgacttcttcggcgacaccctcgaatcgatccgcgccttcgatccc
gagacccaacgcaccatcgggcagctgcgctccctcgacctcgtgccgatgagcgaggtg
cagcttaccaccgagacgatccggcgcttccgccagggctacgtcacgaccttcggcgcc
gccacccgcgacgaccggctctacgagacgatcagcgagggccggcgctatgccggcctc
gagcactggatgccgctgttctacgaccacctcgacacgctgttcgactacgtcgccggc
gtgcccctcatcctcgaccaccaggtcgacgacgcggtggccgagcgcctgtcccaggtg
caggaatactacgacgcccgctgcgaggccctgaaggagcgccagagcgacaccgcgccc
tacaagcccctgaagcccgacgcgctctacctctcgccgaacgagtgggcgaagcgcatc
gagggcgcgaccgtcgctcggcttgcccccttcgacgtgccgaaggtctccggccgcaag
ctcatcgacggcgagggcgtgcccggccgcagcttcgcgcccgagcgggcgaaggagggc
gtcaacgtcttcgacgcggcggtgacccatatccgcgagctgcaaggcacgggccatcac
gtcgtcctggcggcctggtcggagggctcgcgcgaccggctctgcggcgtgctgaccgag
cacgggttgccgaagcctaagaccatcacgcggctctccgacatcctggcgatgaagcgc
ggccaggatctcggcgtcgcggtctggggcctggagagcggcttctcggcgggccagctc
gccgtggtggcggagggcgacatcctcggcgaccggctggtgcggcccaagcgcaaggcc
aagcgcccccaggacgtgatcctggaggtgcaggcgctggcgcccggcgacctcgtggtt
catgccgatcacggcatcgggcggttcgtcggcctcaagaccgtgacggcggcgggcgcg
ccgcacgattgcctggagatccagtatagcggcggcctgctgctgctgccggtcgagaac
atcgaactcctgacccgctacggctcggaggatgccgacgtcgccctcgacaagctcggc
ggcggggcctggcaggcgcgcaaggccaagctcaagcgccggatcatggagatggccggc
gccctcatcaaggtcgcggccgagcgcttcctgaaatcggcgcccaagatggccccgccc
gagggcacctacggcgagttcgccgcccgcttcccctacgaggagaccgaggaccaggag
gcggcgatcgccgcgacgctcggcgacctcacctcgggccggccgatggaccggctggtc
tgcggcgacgtcggcttcggcaagaccgaggtggcgttgcgcgccgccttcgtcaccgcg
ctctcgggcaagcaggtcgccgtggtggtgccgaccacgcttctcgcgcgccagcacgcc
cgcaccttcgaggcccgcttcaagggcctgccggtcaacgtcgcgcaggcctcgcgcttc
gtcagcaacgccgaattgaagaaggtccgcgagggcctggccgacggctcggtcgacatc
gtggtcggcacccacgccctgctcgccaagaacatcgccttcaaggatctcggcctcatc
atcatcgacgaggagcagcatttcggcgtctcccacaaggagcggctgaaggcgctgaag
gcggaggtccacgtcctgacgctctccgccacgccgatcccccgcacgctgcagctcgcc
atgacgggggtgcgcgaactctccatcatcgcgacgccgccggtcgatcgcctcgcggtg
cgcaccttcgtgatgccgttcgacccgctctcgatccgcgaggcgctgctgcgcgagcgc
taccgcggcggccaggccttctacgtcgtgccgcgcatcgagcacctggaggaggtcaag
cgcttcctcgaccgcgaggtgcccgaggccaaggtggcggtggcccacggccagatggcg
gcgggccagctcgaggacgtgatgacggccttctacgagggccagtacgacatcctgctc
gccaccacgatcgtcgaatcgggcctcgacatcccgaccgccaacaccctgatcgttcac
cgcgccgacatgttcggcctcgcccagctctaccagctgcgcggccgcgtcggccgctcc
aaggcccgagcctacgcgctgttcaccacgccggagggcaagcccctgacggtgcaggcg
gaacggcgcttgagcgtgctgcaatccctcgacacgctcggcgccggcttccagctcgcc
agccacgacctcgacatccgcggcgccggcaacctgctcggcgacgagcaatccggccac
gtcaaggaagtcggctacgagctctaccagcagatgctggagagcgcggtcgcggcgctg
aaatccggcaacgcgctgccgaccgacgagcaatggtcgccgaccatcgcgctcggcgct
ccggtcacgatgccggaggagtacgtcgcggacctctcggtgcggctcggcctctaccgc
cgcctcgcgacgctggagaacgaccgcgagctcgagagcttcggcgccgagctgatcgac
cgcttcggcccgctgccgccggaggtggaagagctcctgaagatcgtgacgatcaagatc
ctgtgccgccagaccaacgtcgagaaggtcgaggccggcccgaagggcatcgtcatgcac
ttccgcgaccggtccttcgccaacccggccaagctcgccggctacatcgccgaccagcgc
tccttcgccaaggtgcgcccggacatgagcgtggtgttcatccgtgatctggcgacggtg
gcggagcggctgaaggagacgacggcgatcctgcgggacctggtgaagctgatcacgcgg
aagaaggcggcgtga
DBGET
integrated database retrieval system
