Microcystis aeruginosa: MAE_20800
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Entry
MAE_20800 CDS
T00647
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mar
Microcystis aeruginosa
Pathway
mar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MAE_20800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mar03400
]
MAE_20800
Enzymes [BR:
mar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MAE_20800
DNA repair and recombination proteins [BR:
mar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MAE_20800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BAG01902
UniProt:
B0JXS5
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All DBs
Position
1854616..1858098
Genome browser
AA seq
1160 aa
AA seq
DB search
MTFASVIRNIEKSPLTAELIQKLEKNGNLTLTGLARLPKGLIGTAFARCQGKNLLIICAN
LEEAARWAAQLEAMTWKGVFFYPTSEACPYERFNRESEMIWGQMQVLSAISHQEAGIAIV
TTEKALQPHLPPREVFEQYSDNFAVGRVIEAKNLDLTLARLGYERVSLVETEGQWSRRGD
IVDIFPVSAELPVRLEFFGDELEKLREFDPATQRSLDSIPNLLLTPTSFAAMIAPSLPPT
VADYLEAEEREKLANGIYPEGIERFLGLSFRQPASLLDYLPENTLIAFDELESCQARSDR
WIEYIGERWQEIEPALPQIHRSFGESLQISVKFPHLYLSEIDDHLSENSLNLSSRPIPTN
PGQFAKLAEILRGKREIYSGIKVNKYATWLISAQPSRTVSLLQEHDCPAQFIPNPLDFGA
IERLIIQNTATALKYSGLAELEGFILPTYRIVVVSDREFFGQHLLNTAGYVRKRRQAASV
QVDVNKLRPLDFVVHKHHGIGQFIKLEKQESTISGVVQGRDYLVIKYADGLLRVPADSVD
NLSRYRHTGNQEPELHKISGKAWEATKARVRKSVKKLAVDLINIYAQRAQKSGFAYPMDN
PWQRELEDSFPYQPTADQLKAIQDVKRDLESDRPMDRLVCGDVGFGKTEVAIRAIFKAVT
TGHKQVALLAPTTILTQQHYHTLKERFAPYPINVGLLNRFRTNSEKKDIVQRLKTGELDI
VVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLTATPIPRTLYMS
LSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQIFYVVPRIEGIEEKA
AAIQGMIPGARIAIGHGRMDEAELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIE
DAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQEFTQLGSGYQLA
TRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALREIQGQEIPQVEDTQIDLKLTAF
IPNDYISDPEQKMDVYRAIATANSQKNLGQIAADLVDRYGAIPSPVAQLFKVIELKHLAK
SLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHIQSRFVYSPKQVTVRGLGLVKPPQ
QLDSLLDWLAKCKDGLPMGN
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgcctccgttattcgcaacattgaaaaatcgccattaactgccgaacttatc
caaaaactggagaaaaacggcaatttaaccctaaccggccttgcccgcttaccgaaagga
ttaatcggcacagctttcgcccgttgtcaaggaaaaaatcttttaattatctgtgccaat
ctggaggaagcggcacgttgggcggcacaattagaagcgatgacgtggaaaggtgttttc
ttttatcccacctcggaagcttgcccctacgagagatttaatcgggaatccgagatgatt
tgggggcagatgcaggtattatcggcaatcagtcatcaagaggccggaattgcgatcgtt
accaccgaaaaggccctgcagccccatttaccccctagagaggttttcgagcagtatagc
gataattttgcggtaggaagggttatagaagccaaaaacctcgatctaaccctagctaga
ttaggatatgaacgggtttcactggtagaaaccgaagggcaatggagtcgtcgcggcgat
atcgttgatattttcccagtttcggccgaattaccggtcaggttagaatttttcggcgat
gaattggaaaaattgcgagaatttgaccctgccacccaaagatccctcgattctatcccc
aatctgcttcttactcccactagcttcgcggcgatgattgccccttctcttccccccaca
gtggccgattatttggaggctgaagagcgagaaaaattggctaatggcatttatccagag
ggaattgagcgatttttaggcttgtccttccgtcaacctgcctctttattggattatctc
cccgaaaatactcttattgcctttgatgaactggaaagctgtcaagctagaagcgatcgc
tggatagaatatattggggaacgctggcaagagatagaaccagctttaccgcaaattcac
cgttcttttggcgaatctctgcaaatatcggttaaatttccccatctctacctctcagaa
atagacgatcacctctccgaaaatagtcttaatctctccagtcgtccgattcccaccaat
ccggggcaattcgccaaactagcggaaattttacggggaaaaagagagatttatagcggt
attaaagtaaataagtacgctacatggttaatatctgcccaaccctcccgtacagtctcg
ttattacaggaacacgactgtccagcccaatttatccccaatcccctcgattttggggcg
atcgagcgcttaatcattcaaaacaccgctacagccctaaaatactcaggattagctgaa
ttagaaggttttatcctccccacctatcgcatagtcgtcgttagcgatcgagagttcttc
gggcaacatcttttaaatactgctggttacgtccgcaaacgtcggcaagcagcctcggta
caggtggacgtgaacaaactccgtcccctcgactttgtagtacataaacaccatggcatc
ggacagtttatcaaactagaaaagcaggaaagcacaattagcggagtagtgcaaggtcga
gattatctagttattaagtatgctgatggattattgcgggttcctgccgattctgttgat
aatctctcccgttatcgtcatacaggtaatcaagagcctgaattacataaaatctctggc
aaagcgtgggaagcaacgaaagcccgcgtcaggaagtcggttaagaagttagcggttgat
ttaatcaatatttacgcccaacgcgcccaaaaatcgggttttgcctatccgatggataat
ccctggcagcgggagttagaggattcttttccctaccaacccactgctgatcaactgaaa
gcaatacaggatgtgaaacgggatttagaaagcgatcgcccgatggatcgcttagtctgt
ggtgatgtgggttttggtaagacagaagtggccattcgtgctatttttaaagctgtcacc
acgggtcataaacaggtggctttattagcaccaacaacgattttaacccaacaacattat
cacaccctaaaagaacgttttgctccctatcccattaatgtgggtttattaaatcgtttt
cgcaccaattccgagaaaaaagatatcgtccagcgcttgaaaacgggggaattggatata
gtagtggggacgcagttgttattgagtaaagcggtggagtttaaagatttaggattattg
gtaattgatgaagaacagcgttttggggtcaatcaaaaggaaaaaattaaggcttttaaa
agtaatattgatgtgttaaccttgacggcaacaccgattccccggactctttatatgtcc
ctttctggggtgcgagaaatgagtttaattaccacacctcctccctctcgtcgtcccatc
caaacccacctttctagttataattctgatgtgattagaacggcaattcgcaatgaattg
gatcgggggggacagattttttatgtagtaccaagaatcgagggaattgaagaaaaagcg
gcagcaattcaagggatgattccgggtgctagaattgccatcggccacggtcgtatggat
gaggctgaattagagaccaccatgttagcttttaataatggggaagcggatatcttagtc
tgtacgactattgtagagtcggggttagatattcccagagttaacacgattatcattgaa
gatgcccaaaaattcggtttagcgcaactctatcaactgcggggacgggtggggcgatcg
ggagtacaagcgcacgcttggttactttatccggccaaggcagaactaacagaaaccgct
cgggaaagattaaaggcaattcaagaatttacccagttaggatcggggtatcaattagca
actagggatctggaaattcgcggtgcgggtaacttattaggtgcggaacaatcgggacaa
atggaagcgatcggttttgatctatatatggaaatgttacaggaagctttgcgagaaatt
caaggtcaagaaattcctcaagtggaggatacccaaatcgatctgaaattgacggcattt
attcctaacgattatatatccgatccggagcagaaaatggatgtctatcgggcgatcgct
actgccaattctcagaaaaatttaggacaaattgccgccgatttagtcgatagatatggg
gcaattccttccccagtggcacaattatttaaggtaatcgagttaaaacatctggctaaa
tccctcggtttttcgcgcattaaacccgatggaaaacagcatattatcctcgaaactcct
atggaggaaccagcgtggaaattattacaagaacacctaccccaacatatacaatcacgc
tttgtttatagtcccaaacaggtgacggttaggggtttaggattggtaaaaccaccacag
cagttagatagtttattggactggttggctaagtgtaaagatggtttaccgatggggaat
tag
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