Marinobacter sp. Arc7-DN-1: D0851_04530
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Entry
D0851_04530 CDS
T05619
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mara
Marinobacter sp. Arc7-DN-1
Pathway
mara03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mara00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D0851_04530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mara03400
]
D0851_04530
Enzymes [BR:
mara01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D0851_04530
DNA repair and recombination proteins [BR:
mara03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D0851_04530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AAA_30
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AXS82362
UniProt:
A0A346RYD6
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All DBs
Position
976691..980224
Genome browser
AA seq
1177 aa
AA seq
DB search
MSQGATTHPSSRIMIAPEFPTRPANHRIWGQLHGSSDALAICESARAHKGLTLVITRSTD
DAIRLEQAMRFFLGLDAGEDGPAVSEDGLELLSLPDWETLPYDLFSPHQDITSRRIRTLH
RLPSTSHGVLVVPARTLMHRLPPVSYLQGNTLVLEVGQSLDIDSWRMQLEAAGYRHAENV
YEHGEYAVRGSILDIFPMGAGQPYRIDLFDDEIETLRTFDPETQRSIDRIDHIELLPAYE
FPWHKEARSGFRSRWFEQFPNSGKDTPIYQDVTHGITPPGIEYYLPLFFDQTATLFDYLP
GTTHVFTAAELNEAVSHFDSETRNRYEDRRHDRLRPILPPGLLFLQQDELFGHLKAFPRV
SISSETSDAAGSFNCPSQTLPDIAMDGRAADPAGRLKRFLREFSGRVLICAESSGRREAL
IENLGDQGLELETLANWQAFLENNGCPLGITIAPMEQGLLLPEHSLALITETALFGERVL
QRRRREKPTQTDDTGFRDLSELRIGAPVVHIDHGVGRYRGLETITVEDEASEFLMLEYAG
GSKLYVPVSSLHLISRYAGNDTEHAPLHKLGTDRWSTTKQKALEKIRDTAAELLDVYARR
EARKGFSFEDPKEAYRAFAAGFPFEETPDQQVAIQSVIEDMTSERPMDRLVCGDVGFGKT
EVAMRAAFMATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTAVQVELLSRFRSSGQTSKA
MEAIGNGKADIVIGTHKLLQGDIRFKNLGLVIIDEEHRFGVQQKEKLKALRAEVDMLTLT
ATPIPRTLNMAMGHLRDLSIIATPPARRLSVKTFVRQRDNPMVKEAILREILRGGQVYFL
HNDVATIEKTAQDLRSLIPEARVGVAHGQMRERDLEQIMSDFYHKRFNVLVCTTIVETGI
DIPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLEAISE
AQDLGAGFMLATHDLEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNAD
LPLSHGTEMNLRIPALIPEDYLPDVHNRLMLYKRIASVDNNEALKELQVEMIDRFGLLPD
PARNLIRQTGLRLEAEALGIVKVDAGKEWARLEFGSSTPVDPLVLVKKVQSGPDQYRLEG
ANSFRFRLKDATTDGKLDGISRMLDELEPAKHGASGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaggtgcaaccacccacccgtcatcccggatcatgattgccccggaatttcca
acccggccggccaatcatcgcatatggggccaattgcacggcagcagtgacgcgctggcc
atctgtgaaagtgcccgcgcccacaagggcctgacgctggtcatcacccgcagcaccgac
gatgccattcgcctggagcaggccatgcgctttttccttggcctggacgccggggaagat
ggcccggcagtcagcgaggatggactggaactgctgtcattgccagactgggaaaccctg
ccctacgacctgttttcgccgcaccaggacattacttccaggcgtatccgcaccttgcac
cggctgccgtcaaccagccacggcgtgctcgtcgtaccggcacgaacgctcatgcacagg
ctgcccccggtcagctatctccagggcaacacacttgtgctggaagtcggccagtccctg
gacatcgacagctggcgaatgcagctggaagccgcaggataccggcacgcggaaaacgtc
tatgagcatggggagtatgccgttcgtggctcgatcctcgacatctttcccatgggtgcc
ggccagccctaccggatcgacctgttcgatgatgagattgaaacgctcaggaccttcgac
ccggagacccagcgctcgatcgatcgtatagaccacatcgaactgctgcccgcgtatgag
ttcccctggcacaaggaagcccgttccggattccgcagccgctggttcgagcagttcccc
aattcgggcaaagacacgcccatttatcaggatgtgacccacggcattacaccaccaggg
attgagtactacctgcccctgttcttcgaccaaacagctactctgttcgattacctgccg
ggcacaacccatgtatttaccgccgctgaactgaacgaagccgtcagccacttcgactcc
gaaacccggaaccggtacgaggaccgccgccacgaccgcttacgaccaatcctgccgccc
ggcctcctgttcctgcagcaggatgaactgtttggtcacctgaaggcgttcccgcgggta
tcgatatcgtctgaaacctcggacgccgccggatcgttcaactgccccagtcaaaccctg
ccagacattgccatggacggtcgcgccgctgatcctgccggccgcctgaagcggtttctc
cgggaattcagtggccgggtgctgatctgcgcggaatcatccggccggcgtgaggccctg
attgaaaaccttggagaccagggccttgagcttgaaacccttgccaactggcaggcgttt
ctggagaacaacggatgtccgctgggcattaccattgccccgatggagcaagggctcctg
ctcccggagcactcccttgcgctgattaccgaaaccgcgctcttcggagagcgggtgctg
caaagacggcgccgggaaaaaccgacacaaaccgatgataccggtttccgggacctgtca
gagctgcgcatcggtgctccagtggtccacatcgaccatggtgtcggtcgctaccggggc
ctggaaaccattactgttgaagacgaagccagcgaatttctgatgctggaatatgccggc
ggctcaaaactctatgtgccggtgtccagtcttcacctgatttcccgctatgccggtaac
gacaccgagcatgccccgctgcacaaactcggcacggatcgctggagcacaaccaaacag
aaagcgctggagaaaatccgcgacaccgcagcggaacttctggatgtctacgcccgccgg
gaggcccgcaagggcttcagctttgaagatccgaaagaggcctaccgggcctttgccgcc
ggcttccccttcgaggagaccccggaccagcaggtcgccattcagtccgttattgaagac
atgaccagtgaacgcccgatggaccgccttgtctgtggtgacgtcggctttggcaaaacc
gaagtggccatgcgggccgcttttatggcgacctggtccggcaaacaggtggccgtcctg
gtgccaaccaccctgctggcacagcaacactatgagtcgttccgggaccggttctcagac
acggccgtacaggtggaactgctcagccgcttccgctcgtccggccagaccagcaaggca
atggaagccattggaaatggcaaggccgacatcgtgatcggcacccataaactccttcag
ggcgatatccggttcaaaaacctcgggctggtgatcatcgacgaagaacatcgtttcggc
gtgcagcagaaggaaaaactcaaggccctgcgggcggaagtcgacatgctcactctcacc
gcgacgccgattccgcgtacgctgaacatggccatgggacacctgagggatctgtcgatc
atcgccacaccgccggcccggcgcctgtcggtgaagacctttgtccgccagcgggacaac
cccatggtcaaggaagccatcctccgggaaatactccggggcggccaggtgtacttcctc
cataacgatgtggcgaccattgaaaaaaccgctcaggacctccggtcgctgattcccgaa
gcccgggtgggtgtggcccatggccagatgcgggaacgggacctggaacagatcatgtcg
gatttctaccacaagcgcttcaatgtgctggtgtgcaccaccattgtcgaaaccggcatc
gacattcccagcgccaacaccattatcatcgagcgggccgacaagttcggcctggcgcag
ctgcatcagttgcgtggccgcgtgggtcgctcgcaccaccaggcctatgcctacctgctg
acgccgccgccgaaatccatcaccgcggacgccaaaaagcgtctggaggccatctcggaa
gcacaggacctgggtgccggtttcatgctggccacccacgacctggaaatccggggcgct
ggcgagttgctcggagaggaacagagcggccagatcgaaagcatcggctttacgctgtac
atgcagctgctggatgaggccgtcaaggccattcgtgagggccggacgccaaatgccgat
ctgcccctgagccacggcaccgaaatgaatctgcgtattcctgccctgattccggaggat
tacctgccggacgtccataaccggctgatgctgtacaagcgaattgccagcgtggataac
aacgaagcattaaaagaacttcaggttgagatgattgaccggttcggattattaccggat
ccggccaggaacctgatccgccagaccgggcttcggctcgaggcagaggccctgggtatc
gtgaaagtcgatgccggcaaggaatgggcgcgcctggaatttggcagctcgacgccggta
gacccgttggtactggttaaaaaagtgcaatccgggccggaccagtaccggcttgaaggg
gccaacagcttccgttttcggctgaaggatgccacaaccgatggtaaactcgacggcatt
tcccggatgcttgacgaactggaacctgccaaacacggcgcatccggctcatga
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