KEGG   Marinobacter sp. Arc7-DN-1: D0851_04530
Entry
D0851_04530       CDS       T05619                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
mara  Marinobacter sp. Arc7-DN-1
Pathway
mara03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mara00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    D0851_04530
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mara03400]
    D0851_04530
Enzymes [BR:mara01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     D0851_04530
DNA repair and recombination proteins [BR:mara03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      D0851_04530
SSDB
Motif
Pfam: UvrB_inter DEAD TRCF MFD_D3 Helicase_C CarD_TRCF_RID ResIII SNF2-rel_dom UB2H ERCC3_RAD25_C AAA_30 SecA_DEAD RecG_dom3_C
Other DBs
NCBI-ProteinID: AXS82362
UniProt: A0A346RYD6
LinkDB
Position
976691..980224
AA seq 1177 aa
MSQGATTHPSSRIMIAPEFPTRPANHRIWGQLHGSSDALAICESARAHKGLTLVITRSTD
DAIRLEQAMRFFLGLDAGEDGPAVSEDGLELLSLPDWETLPYDLFSPHQDITSRRIRTLH
RLPSTSHGVLVVPARTLMHRLPPVSYLQGNTLVLEVGQSLDIDSWRMQLEAAGYRHAENV
YEHGEYAVRGSILDIFPMGAGQPYRIDLFDDEIETLRTFDPETQRSIDRIDHIELLPAYE
FPWHKEARSGFRSRWFEQFPNSGKDTPIYQDVTHGITPPGIEYYLPLFFDQTATLFDYLP
GTTHVFTAAELNEAVSHFDSETRNRYEDRRHDRLRPILPPGLLFLQQDELFGHLKAFPRV
SISSETSDAAGSFNCPSQTLPDIAMDGRAADPAGRLKRFLREFSGRVLICAESSGRREAL
IENLGDQGLELETLANWQAFLENNGCPLGITIAPMEQGLLLPEHSLALITETALFGERVL
QRRRREKPTQTDDTGFRDLSELRIGAPVVHIDHGVGRYRGLETITVEDEASEFLMLEYAG
GSKLYVPVSSLHLISRYAGNDTEHAPLHKLGTDRWSTTKQKALEKIRDTAAELLDVYARR
EARKGFSFEDPKEAYRAFAAGFPFEETPDQQVAIQSVIEDMTSERPMDRLVCGDVGFGKT
EVAMRAAFMATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTAVQVELLSRFRSSGQTSKA
MEAIGNGKADIVIGTHKLLQGDIRFKNLGLVIIDEEHRFGVQQKEKLKALRAEVDMLTLT
ATPIPRTLNMAMGHLRDLSIIATPPARRLSVKTFVRQRDNPMVKEAILREILRGGQVYFL
HNDVATIEKTAQDLRSLIPEARVGVAHGQMRERDLEQIMSDFYHKRFNVLVCTTIVETGI
DIPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLEAISE
AQDLGAGFMLATHDLEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNAD
LPLSHGTEMNLRIPALIPEDYLPDVHNRLMLYKRIASVDNNEALKELQVEMIDRFGLLPD
PARNLIRQTGLRLEAEALGIVKVDAGKEWARLEFGSSTPVDPLVLVKKVQSGPDQYRLEG
ANSFRFRLKDATTDGKLDGISRMLDELEPAKHGASGS
NT seq 3534 nt   +upstreamnt  +downstreamnt
atgagccaaggtgcaaccacccacccgtcatcccggatcatgattgccccggaatttcca
acccggccggccaatcatcgcatatggggccaattgcacggcagcagtgacgcgctggcc
atctgtgaaagtgcccgcgcccacaagggcctgacgctggtcatcacccgcagcaccgac
gatgccattcgcctggagcaggccatgcgctttttccttggcctggacgccggggaagat
ggcccggcagtcagcgaggatggactggaactgctgtcattgccagactgggaaaccctg
ccctacgacctgttttcgccgcaccaggacattacttccaggcgtatccgcaccttgcac
cggctgccgtcaaccagccacggcgtgctcgtcgtaccggcacgaacgctcatgcacagg
ctgcccccggtcagctatctccagggcaacacacttgtgctggaagtcggccagtccctg
gacatcgacagctggcgaatgcagctggaagccgcaggataccggcacgcggaaaacgtc
tatgagcatggggagtatgccgttcgtggctcgatcctcgacatctttcccatgggtgcc
ggccagccctaccggatcgacctgttcgatgatgagattgaaacgctcaggaccttcgac
ccggagacccagcgctcgatcgatcgtatagaccacatcgaactgctgcccgcgtatgag
ttcccctggcacaaggaagcccgttccggattccgcagccgctggttcgagcagttcccc
aattcgggcaaagacacgcccatttatcaggatgtgacccacggcattacaccaccaggg
attgagtactacctgcccctgttcttcgaccaaacagctactctgttcgattacctgccg
ggcacaacccatgtatttaccgccgctgaactgaacgaagccgtcagccacttcgactcc
gaaacccggaaccggtacgaggaccgccgccacgaccgcttacgaccaatcctgccgccc
ggcctcctgttcctgcagcaggatgaactgtttggtcacctgaaggcgttcccgcgggta
tcgatatcgtctgaaacctcggacgccgccggatcgttcaactgccccagtcaaaccctg
ccagacattgccatggacggtcgcgccgctgatcctgccggccgcctgaagcggtttctc
cgggaattcagtggccgggtgctgatctgcgcggaatcatccggccggcgtgaggccctg
attgaaaaccttggagaccagggccttgagcttgaaacccttgccaactggcaggcgttt
ctggagaacaacggatgtccgctgggcattaccattgccccgatggagcaagggctcctg
ctcccggagcactcccttgcgctgattaccgaaaccgcgctcttcggagagcgggtgctg
caaagacggcgccgggaaaaaccgacacaaaccgatgataccggtttccgggacctgtca
gagctgcgcatcggtgctccagtggtccacatcgaccatggtgtcggtcgctaccggggc
ctggaaaccattactgttgaagacgaagccagcgaatttctgatgctggaatatgccggc
ggctcaaaactctatgtgccggtgtccagtcttcacctgatttcccgctatgccggtaac
gacaccgagcatgccccgctgcacaaactcggcacggatcgctggagcacaaccaaacag
aaagcgctggagaaaatccgcgacaccgcagcggaacttctggatgtctacgcccgccgg
gaggcccgcaagggcttcagctttgaagatccgaaagaggcctaccgggcctttgccgcc
ggcttccccttcgaggagaccccggaccagcaggtcgccattcagtccgttattgaagac
atgaccagtgaacgcccgatggaccgccttgtctgtggtgacgtcggctttggcaaaacc
gaagtggccatgcgggccgcttttatggcgacctggtccggcaaacaggtggccgtcctg
gtgccaaccaccctgctggcacagcaacactatgagtcgttccgggaccggttctcagac
acggccgtacaggtggaactgctcagccgcttccgctcgtccggccagaccagcaaggca
atggaagccattggaaatggcaaggccgacatcgtgatcggcacccataaactccttcag
ggcgatatccggttcaaaaacctcgggctggtgatcatcgacgaagaacatcgtttcggc
gtgcagcagaaggaaaaactcaaggccctgcgggcggaagtcgacatgctcactctcacc
gcgacgccgattccgcgtacgctgaacatggccatgggacacctgagggatctgtcgatc
atcgccacaccgccggcccggcgcctgtcggtgaagacctttgtccgccagcgggacaac
cccatggtcaaggaagccatcctccgggaaatactccggggcggccaggtgtacttcctc
cataacgatgtggcgaccattgaaaaaaccgctcaggacctccggtcgctgattcccgaa
gcccgggtgggtgtggcccatggccagatgcgggaacgggacctggaacagatcatgtcg
gatttctaccacaagcgcttcaatgtgctggtgtgcaccaccattgtcgaaaccggcatc
gacattcccagcgccaacaccattatcatcgagcgggccgacaagttcggcctggcgcag
ctgcatcagttgcgtggccgcgtgggtcgctcgcaccaccaggcctatgcctacctgctg
acgccgccgccgaaatccatcaccgcggacgccaaaaagcgtctggaggccatctcggaa
gcacaggacctgggtgccggtttcatgctggccacccacgacctggaaatccggggcgct
ggcgagttgctcggagaggaacagagcggccagatcgaaagcatcggctttacgctgtac
atgcagctgctggatgaggccgtcaaggccattcgtgagggccggacgccaaatgccgat
ctgcccctgagccacggcaccgaaatgaatctgcgtattcctgccctgattccggaggat
tacctgccggacgtccataaccggctgatgctgtacaagcgaattgccagcgtggataac
aacgaagcattaaaagaacttcaggttgagatgattgaccggttcggattattaccggat
ccggccaggaacctgatccgccagaccgggcttcggctcgaggcagaggccctgggtatc
gtgaaagtcgatgccggcaaggaatgggcgcgcctggaatttggcagctcgacgccggta
gacccgttggtactggttaaaaaagtgcaatccgggccggaccagtaccggcttgaaggg
gccaacagcttccgttttcggctgaaggatgccacaaccgatggtaaactcgacggcatt
tcccggatgcttgacgaactggaacctgccaaacacggcgcatccggctcatga

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