Maribacter cobaltidurans: CJ263_05930
Help
Entry
CJ263_05930 CDS
T05023
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
marb
Maribacter cobaltidurans
Pathway
marb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
marb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CJ263_05930 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
marb03400
]
CJ263_05930 (mfd)
Enzymes [BR:
marb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJ263_05930 (mfd)
DNA repair and recombination proteins [BR:
marb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CJ263_05930 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
SBP_bac_3
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
ASV32580
UniProt:
A0A223VBL5
LinkDB
All DBs
Position
1394751..1398158
Genome browser
AA seq
1135 aa
AA seq
DB search
MNTSQIQQAFGQSPQLGKLQETISQIQNSENRDTSKIGLKGLTGSSLSFILSEIFKKQER
PFLAIFNDKEEAAYFLNDLERIIGEDDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRIN
SRKKPAVIISYPDALFEKVLTRKELDKNTLKMNLGDTLSLDFLNEVLFEYQFKRVDFVTE
PGEFSVRGGIVDVYSFSNDEPYRVEFFGDEIDSIRTFDVETQLSNNKVKSITIVPNMANK
FLVEQRQSFLTYVASNTLVYAKNTDLLFGRLDDFFEKALEAFSKLSEDIKHASPEELFMS
GGAFKEHLQNFTVLSGDISKGDQNVFEFNTKPQPSFNKKFDLLIDNLNSYREKGYTNYIL
CASEQQSKRFQDIFEEVNEKVHYQTLVFPLYQGFVDDDLKLVCYTDHQIFERYHKFHIKN
GYSKKQSITLKELNKLEIGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLMYGERDILYV
SIHSLHKISKFNGKDGAVPKIYKLGSGAWKKIKDKTKNRVKKIAFDLIKVYAKRRLEKGF
QYAPDSYLQNELEASFIYEDTPDQSSSTEDVKKDMESERPMDRLICGDVGFGKTEVAIRA
AFKAVDNGKQVAVLVPTTILAFQHHRTFSERLKDMPVTVDYLNRFRTAKEKRETLENLAN
GKVDIIIGTHQLVNKNVKFKDLGLLIVDEEQKFGVSVKDKLKSIKENVDVLTLTATPIPR
TLQFSLMAARDLSVINTAPPNRYPIESQVIRFNEDTIRDAVSYEIERGGQIFFIHNRIEN
IKEVAGMIQRLVPDAKVGIGHGQMDGKKLETLMLGFMNGEFDVLVSTTIVESGLDVTNAN
TIFINNANNFGLSDLHQMRGRVGRGNKKAFCYFITPPYEVMTTDARKRIEALEQFTELGS
GFNIAMKDLEIRGAGDLLGGEQSGFINEIGFETYQKILAEAIEELKENEFKELYDEVEGP
HEKIYVKETQIDSDFELLFPDDYINNITERLTLYTDLNKVENEEGLQNFEKQLIDRFGEL
PSQAEDLLNSVRIKWIANSIGLEKIVMKKGKMIGYFISDQQSDFYQTENFTRVLQYVQSH
HQKCKIKEKQTRNGLRLLLTFDGITSVDKALQSLLPFDRTPKNENSSKLEGQKRD
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
ttgaatacatcccaaatccaacaagcctttggacagtctccccaactagggaaactgcag
gagactatttcccaaattcaaaattcagaaaatagagacacttctaaaattggtctaaaa
ggattaacgggttcctctctatcctttatcctttccgaaattttcaaaaaacaggaacgc
ccctttttagccatctttaacgataaggaggaagctgcctattttcttaatgaccttgaa
cgaattattggtgaagacgacgtacttttttatcccggaagctatagacgtccctatcaa
atcgaggaaacggacaatgccaacgtgctgcttagggcagaagtgctgaaccgaatcaat
tccagaaaaaaaccggcagttatcatatcctaccccgatgcgctttttgaaaaagttcta
acaagaaaggaactggacaaaaacaccttgaaaatgaatttgggagacacgctctccctc
gatttcttgaatgaggtgttgttcgaatatcagttcaaacgggtggactttgttaccgaa
ccgggggagttttcggttcgggggggtatcgtggatgtgtattccttttccaatgacgaa
ccttatcgggtagagttttttggcgatgaaatcgatagtatcagaaccttcgatgtagag
acccaactatccaataacaaagtcaaaagcatcaccattgttcccaatatggcgaataag
ttccttgttgaacagcgtcaaagtttccttacctacgtagcctccaatacattggtctat
gccaagaataccgatttgctttttggccgactcgatgatttttttgaaaaggccctagaa
gccttttcaaaactgtccgaagatataaaacatgccagtccggaagagctctttatgagc
ggaggtgcgtttaaagagcatctgcagaatttcactgtattgtccggggacatttcaaaa
ggggaccaaaacgtatttgaattcaacacaaaaccacagccttcgttcaacaaaaagttc
gatttgcttattgataacctcaacagctatagagaaaaagggtataccaattatattctc
tgtgccagtgaacaacagtccaaaagatttcaggacatatttgaggaggtaaacgaaaaa
gtacattatcagaccctagtttttcccttgtaccaaggctttgtagacgatgacttgaaa
ctagtttgttatactgaccatcagatttttgaacgttaccataaattccatataaagaac
gggtactccaaaaagcaatccatcaccctgaaagagcttaataagctggaaattggggat
tatgttacgcacatagatcatggaatcgggaaattcggtgggctacagaaaatagacgta
gagggtaaaaaacaggaggctataaaattgatgtatggcgagcgtgatatcctttatgtg
agtattcattctctgcacaaaatatccaaattcaacggcaaggatggtgccgttcccaaa
atttataaactcggttcgggagcttggaagaaaatcaaggacaagaccaaaaaccgtgta
aagaaaattgcttttgatctcattaaggtatacgcaaaaagacgattggaaaaaggtttc
caatatgccccggacagttatttgcagaacgaattggaagcttcattcatttatgaggat
acgccggaccaaagtagttcgaccgaagatgtgaaaaaagacatggaaagtgagcgcccc
atggaccgattgatctgtggagacgttggctttggaaaaaccgaagtcgccattagggca
gcttttaaggccgtagataatggtaaacaagtggccgttttggttcctaccactattttg
gcctttcaacaccaccgtactttttcggaacgattgaaggatatgccggtaaccgtagat
tatcttaaccgttttaggacggccaaagaaaaacgcgaaaccttggagaatttggccaat
ggcaaagtggatataattattggcacccatcaattggtgaacaaaaatgtaaagtttaag
gacttaggtctgttaattgtagacgaggagcaaaagttcggggtatcggtaaaggataaa
ctcaaatccataaaagaaaatgtagacgtactaaccttgaccgctaccccaattccaaga
acattacaattcagtttaatggcagccagggatttatcggtcatcaatacggcaccccca
aacaggtacccgattgaaagtcaggtgattcgatttaacgaagataccattcgggacgcg
gtaagctatgaaatagaacgaggaggacagatttttttcatccataacagaatagagaac
attaaggaggttgccggtatgattcaacgtttggttcccgatgccaaagttggaattggg
cacggccaaatggatgggaaaaaactggaaactttaatgttaggttttatgaacggtgaa
tttgatgtattggtctccacgactatcgttgaaagcggcctggacgtaaccaatgccaat
accattttcatcaacaacgcaaacaactttggtttaagtgaccttcatcaaatgagggga
cgcgtggggcgtggcaacaaaaaggctttctgttattttatcactccaccctatgaagta
atgactacggacgccagaaaacgtatcgaggctttggaacagtttacggaactcggtagt
ggattcaatatcgccatgaaagatctggaaatacgtggcgccggagatcttttgggtggc
gagcaaagtggcttcatcaacgaaataggttttgaaacctatcaaaaaatattggcggaa
gccattgaggaacttaaggaaaatgaattcaaggaactatatgatgaagtagaaggtccg
catgaaaagatttatgtaaaggaaacgcaaatcgattccgattttgaactgttgttccca
gatgattacatcaataacatcacggaacgattgactttgtatacggacttaaataaagtc
gagaatgaagagggactccaaaactttgagaaacagcttattgaccgtttcggggaacta
ccatcccaagccgaagacttattaaattcggtacggatcaagtggatagccaatagtatt
gggctggaaaaaattgtaatgaaaaaagggaaaatgattggttattttattagcgaccag
caatcagacttttatcaaacggagaatttcacccgggtactacaatacgtacagtcacac
catcaaaaatgtaagatcaaggaaaaacagacccgaaacgggcttcgcctattgttaact
tttgatggtattaccagtgtggacaaggcgctacaatcactattgccttttgatagaaca
cctaaaaatgaaaactcttcaaaattagagggacaaaaaagggattaa
DBGET
integrated database retrieval system
