Marinomonas arctica: IBG28_13040
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Entry
IBG28_13040 CDS
T06902
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mard
Marinomonas arctica
Pathway
mard03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mard00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IBG28_13040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mard03400
]
IBG28_13040 (mfd)
Enzymes [BR:
mard01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IBG28_13040 (mfd)
DNA repair and recombination proteins [BR:
mard03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IBG28_13040 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
UB2H
Glyco_tran_WecG
AAA_22
gp45-slide_C
RecG_dom3_C
LcrG
Motif
Other DBs
NCBI-ProteinID:
QNT04637
UniProt:
A0A7H1J2C1
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All DBs
Position
2801258..2804671
Genome browser
AA seq
1137 aa
AA seq
DB search
MSETVSITLKPGFKNVINGLDGSRKALQLLAIAAQHKRPILIMANTVAELNELEDEILFL
NQNKREILRFSDWETLPYDAFSPHQDIISQRLETLAKLTETKHPIVLTTVASCLTRLCPK
QHLDAQRFHLKEGQELPLEDLSRNLTNAGYLNVENVHEHGEYAIRGALMDVYPMGADNPI
RIDWFDNDIDSIRWFDPETQRSINKVTEIKMLPAKEFPTTAQGIQQFRQAFRERFETNPL
SSPIYQDMSSGIIPAGIEYYLPLFFDQTASVFDYLPDDTLIVRADNFNDQFASIKLDFRS
RHESLNYNIERPILKPDEICLREDELFAKLNQYTNIIFSATGEHPAYNALDVVKIDSRAE
QPLSKLQHFLATTTARVLIVAESAGRREALLDLLKKHNIKPKQVDSWEAFTKSTKSLAIT
EGNIGRGFIINNELALIPESEILGERVSQHRRRNKQNNISEDAIIRNLTELRLNAPVVHI
DHGVGRYLGLTNLEIDGQETELLTLGYANEAKLYVPVSSLQLISRYTGADEDTAPLHKLG
TDKWSVAKQKAAEKARDTAAELLEIYAKREARVGHAFAKPDDQYELFAAGFPFEETPDQQ
MAIDAVMRDMSTKKPMDRLVCGDVGFGKTEVAMRAAFLAVQDGKQVAVLVPTTLLAQQHY
ENFCDRFADWPVEIELLSRFRSGKQSNTSIDRLESGKADIVVGTHKLIQSDIKFANLGLV
IIDEEHRFGVKQKEQFKALRAEVDILTLTATPIPRTLNMSLSGIRDLSIIATPPAKRLSV
KTFVKQKDEHQIKEAILRELHRGGQVYYLHNEVQTIQKAAEELEELIPEARVIVGHGQMR
ERELEQVMSDFYHKRANVLVCSTIIETGIDIPNANTIIIERADKFGLAQLHQLRGRVGRS
HHQAYAYLLTPNDRKVTSDAEKRLEAIMLADKLGAGFTLATHDLEIRGTGELLGDGQSGH
IEHVGFSLFMDMLDRAVKSLKNGESPDIDITSPAQTDVNLRVPALIPEDYLGDVHSRLIL
YKRIASAKVSDELKDLQVEMIDRFGLLPDATKNLFRQTELKLKAESLGINKIEVNAKEGK
IIFNSKTPVDPMKLIKLIQTKPDVYKLAGSDTLKFLVSMNSAEERFQHTTMTLELLH
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaccgtttcaatcaccctaaagcccggcttcaaaaacgtcattaatggttta
gatggcagtcgtaaagccctgcagttgctagccattgccgctcaacataaacggcccatt
ctcattatggccaatacagttgccgagctaaatgagcttgaagatgaaatactgtttcta
aaccaaaataaacgcgaaatactccgattcagtgactgggaaaccttgccatatgatgcc
ttttccccccaccaagacatcatttctcaacgcctagaaacgttagcgaagctgacggaa
actaagcacccaattgtcctgacaaccgtggcatcctgcttaactcgcctatgccccaaa
caacatttagatgcacaacgcttccatttaaaagaagggcaagaactgcctcttgaagac
ttatcccgtaatctcacgaacgcaggctatctaaacgtagaaaatgtccacgagcatggc
gaatatgccattcgcggtgctttaatggatgtgtacccaatgggggcggataatccaatt
cgtatagactggtttgataacgacatcgattctatacgctggttcgacccagaaactcag
cgcagcatcaataaagtgacagaaataaaaatgctgcctgcaaaagagtttccaaccacg
gcgcaaggcatccagcaatttcgtcaagcgtttagagagcgctttgaaaccaatccgctt
tccagtcctatttatcaagacatgtccagcggcattatccctgcgggcatagaatactat
ctgcctttattttttgatcagaccgccagcgtattcgactatctaccagatgacaccctc
atcgtacgcgcagataattttaatgatcagtttgccagtattaaactcgacttccgcagc
cgtcacgagtcactcaattacaatattgaacgccccattttaaagcctgatgaaatctgc
ttgagagaagacgagctgtttgcgaaactcaaccagtataccaacattattttttctgcc
accggtgagcaccctgcctacaacgcccttgatgtggtaaaaatcgactcccgagcagag
caaccactgagcaaattacagcattttcttgccactaccacagcaagagttctcatagtg
gctgaatcagcaggccggcgagaagcactgctcgatttactcaaaaagcacaatatcaaa
ccgaaacaggttgacagctgggaagccttcacaaaatcgaccaaatcgcttgctatcacg
gagggtaacattggtcgcggcttcatcatcaacaatgaattagcgctcattcctgaaagc
gaaatactgggtgagcgtgtttctcagcatcgccgacgcaacaaacaaaacaatattagc
gaagacgctattattcgcaatctcactgaattgcgattaaacgcccccgttgttcatatc
gaccatggtgtcggccgctaccttggattaaccaacttagaaatcgatgggcaagaaaca
gaactactcacccttggctacgccaatgaggcaaagctctatgttcccgtatcctcattg
cagctgatttctcgttacactggcgcagacgaagacaccgcaccattacacaaacttggt
acagataaatggagcgttgcgaagcaaaaagccgctgaaaaagcacgcgacactgcagca
gaattgctagaaatatacgccaagcgcgaagccagagtaggccacgcctttgccaaacca
gacgaccaatatgagctattcgccgcgggcttcccatttgaagaaaccccagatcaacaa
atggccattgatgccgttatgcgcgatatgtccaccaaaaagccgatggaccgtttggta
tgtggcgatgttggattcggcaaaacagaagtggccatgagagcggcctttctggcggtg
caagatggcaaacaagtggctgtcctcgtaccaaccaccctactcgcccaacagcactat
gaaaacttttgtgatcgatttgctgattggccggtagaaatcgaattgctatctcgtttt
cggtctggcaagcaatccaacacctctattgatcgtctagaatcaggcaaagccgatatt
gttgtcggcacgcataaactgattcaaagtgatattaagtttgccaatttgggcttggtt
attattgacgaagaacaccgctttggcgtcaaacagaaagaacaatttaaagccttaaga
gcggaagttgacatactgactctcacggcgacccccattccccgaacattaaatatgtct
ttgtctggtattcgcgatttatccatcatcgccacgcccccagcaaaacgtttatctgta
aaaacctttgtcaaacagaaagacgagcaccagatcaaagaagccatattgcgtgaattg
catcgcggcgggcaggtttattacttacataatgaagtacaaaccattcaaaaagccgca
gaagaattagaagaacttattccagaagctcgcgtcattgtgggtcacgggcaaatgcgt
gaaagagaactggaacaagtgatgtccgatttttatcacaaacgcgccaacgtactcgtc
tgctcgaccatcatagaaaccggcatcgacataccgaatgcgaataccattattattgaa
cgcgcagacaaatttggtttagcgcaactgcaccaattacgtggacgcgttggccgatca
caccaccaagcttacgcttacctactcacacccaatgatcgcaaggtcaccagtgatgcc
gaaaaacgcttagaggccattatgctcgccgacaagctaggggctggcttcactttggcc
actcacgacctagaaattaggggcacaggggaactattaggtgacggccagagtggtcac
attgaacatgttggcttctcactctttatggacatgctggacagagccgtcaaatcatta
aaaaatggcgaatcgcctgatattgatattacctcacccgctcaaaccgatgtgaatttg
cgagtccccgcactgataccagaagattacttaggcgatgtacattcacgcctgattctg
tataaacgcattgccagcgcgaaagtcagtgacgaactgaaagacctacaagtggaaatg
atcgaccgcttcgggttactgcctgatgccaccaaaaacctattccgccaaactgagctc
aaactcaaggcagaaagccttggcattaataaaattgaagtcaacgcaaaagaaggtaaa
atcatcttcaacagcaaaacgccagttgatccgatgaaactgattaaactcattcaaaca
aagccagatgtttataaactcgcaggctctgacaccttgaagtttttagtatcaatgaac
agcgcagaagagcgcttccagcacacaacgatgactttggaattattacattga
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