Mariniflexile sp. TRM1-10: CJ739_1358
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Entry
CJ739_1358 CDS
T05592
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
marf
Mariniflexile sp. TRM1-10
Pathway
marf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
marf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CJ739_1358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
marf03400
]
CJ739_1358
Enzymes [BR:
marf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJ739_1358
DNA repair and recombination proteins [BR:
marf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CJ739_1358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
SBP_bac_3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AXP80447
UniProt:
A0A385BMT1
LinkDB
All DBs
Position
complement(1557427..1560774)
Genome browser
AA seq
1115 aa
AA seq
DB search
MSKTTLSQTYAQTLQMQNLQNSIAQTTGRTHLKGLAGSSFSFVISSVFNQNDLPFLLVFN
DKEEAAFYLNDLEQLCNDKDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPAI
IVTYPDALFEKVVTRKELERHTLKISVNDKLSIDFVNEVLFEYQFKRVDFVTEPGEFSVR
GGIVDVFSFSNDEPYRIEFFGDEVDSIRSFDVETQLSIEQIKKINIIPNIANKLLQESRQ
SFLQYMAQKTVVCFKNVDLFFSRIDDFYSKAEDAFKTLSSDIKHAKPEELFCDSTVLKKQ
LLDFSIVEFGTTAFFNKVPGNIVSYNTTPQPSFNKQFDLLIEDLNTNYDKGYTNYIACVS
EQQAKRFHDIFDDSHLEVKPYKTIVLSLHQGFIDHENQIVCYTDHQIFERYHKFHVKNGY
AKKQAITLKELTNLDIGDYVTHIDYGIGRFGGLQKIDVEGKKQEAIKLIYGERDVLYLSI
HSLHKITKFNGKDGKPPKIYKLGSAAWKTLKEKTKSRVKHIAFNLIKLYAKRKTEKGYQY
NPDSYMQHELEASFIYEDTPDQSTATADIKADMESERPMDRLVCGDVGFGKTEVAIRAAF
KAVDNGKQVAVLVPTTILAYQHSRTFAERLKDFPVTVDYVNRFRTAKEKRETLENLENGK
VDIIIGTHQLVNKTVKFKDLGLLIVDEEQKFGVAVKEKLKTLKDNVDVLTLTATPIPRTL
QFSLMAARDLSVITTPPPNRYPIESHVIRFNEEAIRDAVSYEIERGGQIFFIHNRIENIK
EVAGLIQRLVPDAKIGIGHGQMEGKKLEELMLAFMNGAFDVLVSTTIVESGLDVPNANTI
FINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTDDARKRITALEQFTELGSGF
NIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKENEFKDLYEDHAIEKV
YVKDVTIDSDFELLFPDDYVNNIAERLSLYSKLNEIKNEIELQKFETELIDRFGELPKEV
VDLLNSVQIKWMATKAGFEKIVMKQGKLIGYFINDQQSGFYQSSNFTRVLQFVQSNSNTC
KMKEKQTRNGLRLMLTFENIKSVKQALKVLQPIVV
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaaaccacactttctcaaacctatgctcagactttgcaaatgcaaaatctgcaa
aattctattgcccaaactacgggtagaacacatttaaagggacttgcgggctcctcattt
tcctttgtaatttcaagtgtttttaatcaaaacgacttaccatttttacttgtttttaac
gataaagaggaagcagcgttttatctaaacgatttagaacaactatgtaatgataaagac
gtgttgttttatccgggaagttaccgtaggccttaccaaattgaagaaaccgataacgct
aacgttttgctacgagccgaggttttaaaccgtattaattctcgtaaaaaaccagccata
attgttacctaccccgatgcattattcgagaaagtagtcaccaggaaagagctggaacgc
catactttaaaaatttcggtaaacgataaactatctatcgattttgtaaacgaagtcttg
tttgaatatcagtttaaacgtgtcgattttgttaccgaaccaggtgagttttcagttcgt
ggaggtattgtagatgtgttttcattttcgaacgatgaaccttatcgtatcgagtttttt
ggtgatgaggttgatagtattagaagttttgatgtggaaacccagctttcgatagaacaa
attaaaaaaattaatatcattcccaatatagccaataaattgctgcaggaaagtcgccag
agttttttgcaatacatggctcaaaaaacggtggtgtgttttaaaaatgttgatctattt
ttttcaagaatagatgatttttactcaaaggctgaagacgcttttaaaaccttgtcttca
gatattaagcatgcaaaacccgaagaattattctgtgattcaaccgtattaaaaaaacag
ttattagatttttcaattgtagaatttggtacaacggcatttttcaataaagtaccgggc
aatattgtttcctacaacacaacaccgcaaccttccttcaacaagcaattcgatttgtta
attgaagatttaaataccaattacgataaagggtataccaattatattgcctgcgtaagc
gagcaacaagccaaacggtttcacgatatttttgacgattcgcatctggaagtgaagcca
tataaaaccatagtattgtcgttacatcaaggctttatagaccacgaaaaccaaatagtt
tgttataccgaccatcaaatttttgaacgttaccataagtttcatgttaaaaatggttat
gccaaaaagcaagccataactttaaaagagcttactaatttggatattggcgattacgtt
acgcatatcgattatggtattggacgctttggcggacttcaaaaaatagatgttgaaggc
aaaaaacaagaagccattaaattaatttatggagagcgtgatgtattatatttaagcatt
cactcgttacataaaatcaccaagtttaatggtaaagatggaaaaccaccaaaaatttac
aaacttggtagtgccgcttggaaaacacttaaagaaaaaacaaaatccagggttaaacac
attgcatttaatcttataaaactatacgcaaagcgaaaaaccgaaaaaggctatcaatac
aatcctgatagttatatgcaacacgagttggaagcgtcatttatttacgaagacacaccc
gaccaaagtaccgctaccgccgatattaaagcggatatggaaagcgaacgccctatggac
aggttggtttgtggagatgtgggctttggtaaaacagaggttgctattcgtgcagcattt
aaggccgttgataatggcaaacaagtggctgttttggtgccaaccactattttggcatat
caacattccagaacctttgcagaacggttaaaggatttccccgtaacggtcgattatgta
aaccgttttagaaccgctaaagaaaaacgcgaaacgcttgagaatttagaaaatggcaag
gtcgatattattattggtacccatcaactggtaaataaaaccgtaaaatttaaggattta
ggcttgcttattgttgacgaagagcaaaaattcggcgttgccgtaaaagaaaagctaaaa
accttaaaagacaatgtcgatgtattaaccctaacggctacacccatacctagaacgctt
cagtttagtttaatggcagcgcgcgatttgtcggttattaccacaccgccaccaaacaga
taccctattgaaagtcatgttattcgttttaatgaagaagccattcgtgacgcagtaagt
tatgaaattgagcgtggcggacaaattttcttcattcacaaccgcatagaaaatataaaa
gaagtggctggcttgattcagcgcttggtgcccgatgctaaaattggcattggtcatggg
caaatggaaggtaaaaagttagaggaactcatgttggcatttatgaatggtgcttttgat
gtattggtaagtaccactattgttgaaagtggattggatgtgcccaatgccaatactatt
ttcattaataatgccaataattttggattaagtgatttgcaccaaatgcgtggtcgtgta
gggcgtagtaataaaaaagctttttgttattttataaccccagaatattcggcaatgacc
gatgatgcccgaaagcgtatcactgctttagagcaatttacagaattaggcagtggtttc
aatatcgcaatgaaagatttggaaattcgtggtgcgggtgatttgttaggtggtgaacaa
agcggatttataaacgaaataggcttcgatacctatcaaaaaatattaaatgaagccatt
gaagagctcaaggaaaatgagtttaaggatttgtatgaagaccatgctattgaaaaagtc
tatgtgaaggatgtcactattgattcggattttgaactgctgtttccagacgattacgtg
aataacattgccgaacgtttgagtctatattccaaacttaatgaaataaaaaacgaaatt
gaattacaaaaatttgaaactgaattaatagaccgttttggagaattgccaaaagaagta
gtcgatttgttaaatagcgtccaaataaaatggatggcgaccaaagcaggatttgagaaa
attgtaatgaagcaaggcaagcttataggctattttataaacgatcagcaaagtggtttt
taccaaagcagtaattttacacgtgtgttacagtttgttcagtctaactcaaacacctgt
aaaatgaaagagaaacaaacaagaaacggtttacgcttaatgctaacttttgaaaatatt
aaatcggtaaaacaagctttaaaagtgttacaacccattgtggtgtaa
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