Marinobacter sp. CP1: ACP86_01445
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Entry
ACP86_01445 CDS
T04052
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mari
Marinobacter sp. CP1
Pathway
mari03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mari00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACP86_01445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mari03400
]
ACP86_01445
Enzymes [BR:
mari01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACP86_01445
DNA repair and recombination proteins [BR:
mari03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACP86_01445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
SecA_DEAD
PBP_like_2
RecG_dom3_C
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
AKV94939
UniProt:
A0A0K1U5N6
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All DBs
Position
309900..313433
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AA seq
1177 aa
AA seq
DB search
MSQGASTRPSPLPLIAPEFPSRPADHRTWGQLHGSSEALAICESARAHKGLTLVITRSTA
DAIRLEQAMRFFLGLPPEEDGPAVSDDGLELLSLPDWETLPYDLFSPHQDIISRRIRTLH
RLPATSHGVLVVPARTLMHRLPPVNYLQGNTLLLEVGQSLDIKSWRMQLEAAGYRHAENV
YEHGEYAVRGAILDIFPMGASQPYRIDLFDDEIETLRTFDPETQRSIDRIERIELLPAFE
FPWHKEARSGFRSRWFEQFPDADKDTPIYQDVTHGITPPGIEYYLPLFFDETATLFDYLP
GATHVFTADGLNDAVSHFDSETRNRYEDRRHDRLRPILPPKLLFLQQEELFGQLKAFPRV
TVSAETKDAAGSVNCPTTTLPDIAMDGRAADPAGRLKRFLGEFDGHVLICAESSGRREAL
MENLGEQGVELKTLSGWQAFLDDKESSVAITIAPMEQGLVLPEHSVALITETALFGERVL
QRRRREKPTETDDAGFRDLSELRIGAPVVHIDHGVGRYLGLETITVEGEASEFLMLEYAG
GSKLYVPVSSLHLISRYAGNDTEHAPLHKLGTDRWSTAKQKALEKIRDTAAELLDVYARR
EARKGFSFEDPKEAYRAFAAGFPFEETPDQQVAIQSVFEDMTSEQPMDRLVCGDVGFGKT
EVAMRAAFLATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTPVQVELLSRFRTAGQTSKA
LEAVENGRADIVIGTHKLLQGDIKFKNLGLVIIDEEHRFGVQQKERLKALRAEVDMLNLT
ATPIPRTLNMAMGHLRDLSIIATPPARRLSVRTFVRQKDNAMVKEAILREILRGGQVYFL
HNDVATIEKTAEDLRSLIPEARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGI
DVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAISE
AQDLGAGFMLATHDLEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNAD
LPLSHGTEMNLRIPALIPEDYLPDVHNRLMLYKRIASVDSPEALKELQVEMIDRFGLLPD
PAKNLIRQTELRLRAEALGIVKVDAGKEWARIEFGSSTPVDPLVLVKKVQSAPDQYRLEG
ANSFRFRLKDATTGGKLDGISRMLGELEPAKNDASGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaggtgccagcacacgcccgtcacccctccccctgattgcccccgaatttccg
tctcggccggccgatcaccgaacatggggtcaactgcacggcagcagtgaggcgctggcc
atctgcgaaagtgcgcgcgcgcacaagggtctgaccctggtcattacccgcagcaccgcc
gatgccatccggcttgagcaggccatgcgcttcttcctggggctacccccggaagaagac
ggcccggcggtcagcgacgacgggctggaactgctgtcgctgcccgactgggaaaccttg
ccctacgatctgttttcgccccaccaggacattatttcccggcgaatccggaccctgcac
cgcctgcccgcaaccagccatggggttctcgtggttcctgcacgcacgctgatgcacagg
ctgccgccagtaaattacctccagggcaacaccctgcttctggaagtgggacagtccctg
gatatcaagagctggcgaatgcagcttgaggcggcaggctaccggcatgccgagaacgtc
tacgagcacggcgaatacgcggtccggggcgccatactggacattttccccatgggcgcc
agccagccctatcggattgacctattcgatgatgagatcgaaacgctccggactttcgac
cccgagactcagcgctcaatcgaccggatcgaacgcatcgaactgctgcccgcctttgaa
ttcccctggcacaaagaggcgcgctccggattccgcagccgctggttcgagcagttcccg
gatgccgacaaagacacccccatctaccaggacgtgactcacggcattaccccgccgggc
attgagtactacctgccgctgttcttcgacgagacggcaaccctgtttgactatctgcca
ggcgccactcacgtttttactgcggacggactgaacgatgcggtcagccactttgacagt
gaaacccgcaaccggtacgaagatcgtcgtcacgatcgcctgcggccgattctgccgccc
aagctcctcttcctgcagcaggaagagctgttcggacaactgaaggccttcccgagggta
accgtctccgcggagacaaaggatgccgcgggatcagttaactgccccacgacaaccttg
ccggatatcgccatggacggtcgggccgcagaccctgccggtcgcctcaagcggtttctg
ggagagttcgacggccacgtgctgatatgcgccgaatcgtccggtcggcgcgaggcgctg
atggagaatcttggcgaacagggtgttgaattgaaaaccctgtccggctggcaggctttt
ctcgacgataaggaaagctcggtcgccatcaccattgccccgatggagcaaggcctggtt
ctgcccgagcattccgttgccctgatcaccgagaccgccctgttcggcgagcgggtacta
cagcggcggcgccgcgagaagcctacggaaacggacgatgccggcttccgggatctgtcc
gaattgcggattggtgcgccggtggttcatatcgaccacggtgttggccgttacctgggc
ctggagaccatcaccgtagagggcgaagcgagcgaattcctgatgcttgagtacgccggg
ggctcaaagctgtatgttccggtctccagcctgcacctgatttcccgctatgccggcaat
gacaccgaacacgcgccgctgcacaaactcgggacggaccgctggagcacagcgaaacag
aaagcccttgagaagatccgggacactgccgccgagctgctggatgtgtacgcccgccgg
gaggcgcgcaaaggcttcagcttcgaggatcccaaggaagcctatcgtgcctttgctgcc
ggctttccgttcgaggagacaccagaccagcaggttgctatccagtcggtgttcgaggac
atgaccagcgagcagcccatggatcgcctggtgtgtggcgatgtcggtttcgggaaaacc
gaggttgccatgcgcgcggcgttcctggctacttggtcgggcaagcaggtggcggttctg
gtccccactaccctgctcgcccagcagcattatgaatccttccgggaccgtttctcggat
acccctgtgcaggtcgagctgctcagccggttccgcacggctggccagaccagcaaggcg
ttggaggcggtggagaacggccgggccgacatcgtcatcggcacccacaaactgctacag
ggcgacatcaaattcaagaatcttggcctggttatcatcgacgaagagcatcgctttggc
gttcagcagaaggaaagactgaaagcactgcgggccgaagtggacatgctcaacctgacc
gccaccccgattccgcggacgctgaacatggccatggggcatctgcgggatctctcgatt
atcgccactcctccggcccggcggctctcggtgagaacttttgtgcgccagaaagacaac
gccatggtcaaggaagccatactgcgggagattctccggggcggtcaggtctacttcctc
cacaacgacgtggccaccatcgagaagacggcagaggatctacgttcgctgattccggaa
gcgcgggtgggcgtcgcccacgggcagatgagagagcgtgatctggaaaagatcatgtcc
gacttctaccacaaacgcttcaacgtgctggtgtgcacaaccatcattgagaccggcatc
gacgttcccagcgccaacaccattattatcgagcgggcagacaagttcggcctggcgcaa
ctgcatcagcttcggggccgggtcggccgttcgcaccaccaggcctatgcctacctgctc
acgccaccgccgaaatccatcacggcggacgccaaaaagcgtctggatgcgatttcggag
gcgcaggacctgggtgccggcttcatgctggccactcacgacctggaaatccgcggtgcc
ggggagttattgggggaagaacagagcgggcagatcgaaagcatcggcttcaccctttac
atgcagctgctggacgaggccgtcaaggccattcgcgagggccgaaccccgaatgccgac
ctgccacttagccacggcaccgaaatgaacctgagaatcccggctctgatccccgaggat
tatctgccggatgtccataaccgcctgatgctctacaaacggattgccagcgtggacagc
ccggaagcattaaaagaacttcaggttgaaatgatcgatcggttcggattattaccggat
ccggccaaaaacctgatccgccagaccgagcttcgattgcgtgcagaagccctgggcatc
gtgaaagtcgatgccggcaaggagtgggcgcggatcgagtttggcagctcgacaccggtg
gatccgctggttctggttaaaaaagtgcaatccgcacctgaccagtaccggctcgaaggc
gccaacagcttccgttttcggctgaaggatgccacaaccggtggtaaactcgacggcatt
tcccggatgcttggcgagctggagccagcaaaaaatgacgcgtccggctcatga
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