Marinobacterium aestuarii: A8C75_19160
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Entry
A8C75_19160 CDS
T04398
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mars
Marinobacterium aestuarii
Pathway
mars03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mars00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A8C75_19160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mars03019
]
A8C75_19160
03016 Transfer RNA biogenesis [BR:
mars03016
]
A8C75_19160
Enzymes [BR:
mars01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A8C75_19160
Messenger RNA biogenesis [BR:
mars03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A8C75_19160
Transfer RNA biogenesis [BR:
mars03016
]
Prokaryotic type
tRNA degradation factors
A8C75_19160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
HTH_12
Motif
Other DBs
NCBI-ProteinID:
ANG64379
UniProt:
A0A1A9F3N9
LinkDB
All DBs
Position
complement(4376233..4378689)
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AA seq
818 aa
AA seq
DB search
MTNDWLKRDPQAQAEAEKYGKPAPSRDFLLEFLQEWGAPISHGRLCRELGIDDEDCVEAV
SRRLKAMCRDGQLMSNRRSEFGIIKKMDLIAGRVIGHRDGFGFVSPDAKGDDLFISPRQM
RQVFDGDRVLVQEVSIDYRGRREGKIIEVLERGTRTLVGRYKVQGDLGYLIPENQRITQQ
IMIAADRTGSPPFRDGQLVVAELLQQPGKHEIPEARVVEVLGDHMAPGMEIKVAIHNYEI
PDEWPDAVRQEVASLSAEVEESAKLNRVDLRHLPLVTIDGEDAKDFDDAVYAERKRTGGW
RLWVAIADVSWYVRPGTELDKEGISRGNSVYFPEFVVPMLPEVLSNGLCSLNPHVDRLAM
VCEMTISASGKLSGYQFYEAVIQSHARLTYNKVSTMLTEPKSAQGKQLRGEYAAVVPHLE
DLYSLYFGLRKARDVRGAIDFETTETRILFSAARKIEEIVPVVRNDAHKVIEECMLCANV
ATARFLAKLKVPALYRIHEGPKEQKLVSLRAYLGELGLSLGGGDKPEPSEYQKLAAQIEK
RPDRLVVQTMMLRSMRQAVYSPENLGHFGLAYAAYTHFTSPIRRYPDLLVHRAIRAAIHA
EGDRSLMDRLKSAFSSGSSKTMRRPDGFKSNPQFRYRYTEEQMVQLGEHCSMTERRADDA
TRDVMSWLKCEYMLDQVGEEHEGVITAVTGFGCFVELKQVYVEGLVHITALPSDYYHFDA
AKQRLVGERMRKTYKLGDAVRVKVLRVDLDERKIDFELLDKPGSGKTKSTRERLAEGKLD
DRSSAKSEGGNAGNGAKPAGKKPAGKSRRPRSRNRRPS
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacgactggctaaaacgtgacccccaggctcaggccgaagcagaaaaatatggc
aagccggcaccgagccgcgacttcctgctggaattcctgcaggagtggggcgcgccgatc
agccacggccgcctgtgccgtgagctgggtatcgatgatgaagactgtgttgaagcggtg
tcccgccgcctgaaggccatgtgccgtgacggccagctgatgagcaaccgtcgcagcgaa
ttcggcatcatcaagaaaatggatcttatcgccggccgtgttatcggccaccgcgatggc
tttggttttgtatcgccggacgccaaaggcgatgacctgttcatcagcccgcgtcagatg
cgtcaggtattcgacggtgaccgtgtgctggtgcaggaagtcagcattgactaccgcggc
cgccgcgaaggcaagattatcgaagtgctcgagcgcggtacccgcactctggtggggcgc
tataaggtgcagggcgacctgggctacctgattccggaaaaccagcgcatcacccagcag
atcatgatcgcggcggaccgcacgggcagcccaccgttccgtgatggccagctggtggtg
gccgagctgttgcagcagccgggcaagcacgagatccctgaggcccgcgtggtcgaagtg
ctgggcgatcacatggcgccgggcatggaaatcaaggtggccatccacaactacgaaatt
cccgatgaatggcccgatgccgtgcgtcaggaagtggccagtctgtcggctgaggtggag
gaatccgccaagctgaaccgtgtcgacctgcgccatctgccgctggtcaccatcgacggt
gaagacgccaaggatttcgacgatgctgtctatgccgagcgcaagcgcaccggcggctgg
cgtctgtgggtggcgattgccgatgtgtcctggtatgtccgccccggcactgagctcgac
aaggaaggtatcagccgcggcaactcggtgtacttccccgagtttgtcgtgcccatgctg
cctgaagtgctgtccaacggcctctgctcgctgaacccccatgtggatcgtctggcgatg
gtgtgcgagatgaccatcagcgccagcggcaagctgtcgggttaccagttctatgaagcg
gtgattcagtcccatgcgcgcctgacctacaacaaggtctccaccatgctgacagagccg
aaaagcgcccagggcaagcagctgcggggtgaatatgccgccgttgtgccgcaccttgaa
gacctgtacagcctgtactttgggctgcgcaaggcgcgggatgtgcgcggtgccatcgat
ttcgagaccaccgagacccgtatcctgttctccgcagcgcgcaagatcgaagagatagta
ccggtcgtgcgcaacgacgcccacaaggtgatcgaagagtgcatgctgtgcgccaacgtg
gcgacggcgcgtttcctggccaagctcaaggtgccggcactctaccgcatccatgaaggc
ccgaaagagcagaagctggtgagcttgcgggcttatctgggtgagctgggtctgtcactc
ggtggtggcgataagccggagccgtccgagtaccagaaactggcggcgcagatcgaaaag
cgtccggatcgtctggtcgtacagaccatgatgctgcgctccatgcgccaggccgtgtac
agccctgaaaatctggggcactttggtctggcctatgcggcctatactcacttcacctcg
ccgatccgtcgttatccggatctgctggtgcacagggcgattcgtgccgccattcatgcc
gagggtgatcgctcactgatggatcgcctcaagtcggccttcagcagcggctcgtccaag
accatgcgccggccggatggcttcaagtccaatccgcagtttcgttaccgctacacagaa
gagcagatggtgcagctgggcgagcactgctccatgaccgagcgtcgcgccgatgatgcc
acccgggatgtcatgtcctggctcaagtgcgagtacatgctggatcaggtgggcgaggag
cacgaaggcgtgattaccgccgtgaccggctttggctgctttgtcgagctcaagcaggtg
tacgtcgaaggtctggtgcatattactgcgctgccgtcggactactatcacttcgatgcc
gccaagcagcgtctggtgggtgagcgcatgcgcaagacctacaagctcggcgatgccgtg
cgggtgaaggtgctgcgggtggacctggatgagcgcaagatcgatttcgagctgctcgac
aaacctggctccggcaagaccaagagcacgcgtgagcgtttggctgaaggcaagctggac
gaccgctcgagtgccaagtctgaaggcggcaatgccggtaacggcgccaagcccgccggc
aagaagcctgcaggcaagagccgtcggccgcgctcgcgcaaccgccgtccgtcctag
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