Mahella australiensis: Mahau_0798
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Entry
Mahau_0798 CDS
T01494
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mas
Mahella australiensis
Pathway
mas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mahau_0798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mas03400
]
Mahau_0798
Enzymes [BR:
mas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mahau_0798
DNA repair and recombination proteins [BR:
mas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mahau_0798
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AEE95996
UniProt:
F4A1G2
LinkDB
All DBs
Position
840718..844197
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDLLTRVFERSDISKRIHDSLRNDSDRLEIYGVPDEGRAYLMYVLVNIASSKSAIVITH
NEVRAKQLYDDMSSIFKDIPVYLFPAAETILYDVSGKSNEVLFQRLEIENRLAFKENMIV
IASIDALLPRLMPFEEFNKYFHEISIGQIIERDVMERWLLEAGYQREELVEAKGQFAIRG
DIIDFYPIVGEEAYRIEFFDDEVDSIRRFDADTQRSTDKVDKAVISPVKELVYDSGVADR
AAKAMRSEFERINGNDQIGGDIELLSQNARFENVERYMPFFYNKVAGLLDYMPTGTLFFM
EEEERIRQRNRTLHEEFEQVFKALLIKGEVLPSQAYLLSDYDALCSCLNRQRAVMLETFH
QAGTKPSIKIDAKKIPSFQGNMDIIVDELRQWKSAGYTIIIATLSDNRGLRIQDMLQQSG
IEAWFTRRLDIDMRPGQICIIDMPLSSGTEWPDIKCVILTDQELFGMQRRRSKVKTRKAG
QRVTAFSDLNIGDYVVHENYGIGQYMGIKKLTVEGKSRDYLFIRYADGDNLYVPTDRMSL
VQRYIGGDGASPRLSKLGGSEWSKTKAKVRESVRKMAGELLKLYASRYTTKGHAFSPDTV
WQAQLEESFPYQETPDQLQAIEEIKADMESDKPMDRLLCGDVGYGKTEVALRAAFKAVMD
GKQVAVLVPTTVLAQQHYNTFTNRLAGFPIKVDVISRFRSVQEQKDIVKGLKSGDIDIII
GTHALLSSNVKFHDLGLLIVDEEQRFGVSHKEAIKRFKNNVDVLTLTATPIPRTLHMSLS
GIRDISIIETPPEDRYPVQTYVVEYDENIIRDAILKELGRGGQVYFVYNRINSIDVMAIH
LHELVPEARIAVAHGRMGDDKLERVMMDFMDGYYDVLLCTTIIETGLDIPNVNTLIVYDA
DHFGLAQLYQLRGRVGRSNRLAYAYFTYKKDRVLTEEAEKRLHAITEFTEFGSGFKIALR
DLEIRGAGNLLGAEQHGHMAAVGYDMYCKLLEEAIAQLKGETPEEEIDTSIEIKLDAYIP
DDYVPSEAQRIEIYKRIMSISDIEEEYDVEEEIEDRFGDIPQSVRNLLSIMHIKLLSKKI
GIVSIEQKGHDIVFTLRDDKNIDLSGLIRVMDEYKGRVRFAATDQPSFYFNIGNETSEGI
LKDIRELLEKTMGLQAVAC
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatttattaacgagggtttttgaacgttccgatatatcaaagcgtattcatgat
tctttgagaaacgattcagaccgattggagatatatggcgtaccggatgagggtagagcc
tatctgatgtatgtattggtaaatattgctagttccaaatcggccattgttattacgcac
aacgaggtgcgtgccaagcagttatacgacgatatgtcatcgatattcaaagatataccg
gtttatctttttccggccgctgaaaccattttatatgacgtaagcggtaaaagcaatgag
gtgttatttcagaggctggaaatagaaaatcgtctggcttttaaagaaaatatgatagtt
atagcttcgatagatgcattgctgcccagacttatgccatttgaggaatttaataaatac
tttcatgaaatatcgatagggcagataatagaacgcgatgttatggaaagatggttgtta
gaagcaggctatcaaagagaagaattggtagaggccaaaggacaatttgccataagaggg
gatataattgatttttatcccattgtgggtgaagaggcatatcggatagaatttttcgac
gacgaagtggattctatcagaaggtttgatgccgatacacagcgttccactgataaagtg
gacaaagccgtcatatcgcctgtaaaggagctggtatatgatagcggtgtagccgataga
gcagctaaagctatgcgttcggaatttgaacgcataaatggcaacgatcagataggcggc
gatattgaactgttaagccaaaacgcccgatttgagaacgtagagcgatatatgccgttt
ttttacaataaagtggctggcttattagattatatgcctaccggaacattgttttttatg
gaagaagaggagcgtataagacaaagaaaccgtacgcttcatgaagaatttgagcaggtg
tttaaggctttacttattaagggagaggtattgccttcgcaagcttatttgctaagcgat
tatgacgcattgtgttcgtgcttgaatagacaacgcgctgttatgttggaaacatttcat
caagctggcacgaaaccgtctataaaaatagacgctaaaaagataccgtctttccagggg
aatatggatattatagtcgatgaactgcgccagtggaagtctgccgggtatactataata
atagcgactttgagcgataacagagggctgcgcatccaagatatgcttcaacaaagcggc
atagaagcatggttcacgagacgtctggatatcgatatgcgaccagggcagatatgtata
atagacatgccgttgagcagcggtactgaatggccagatattaaatgcgtgatacttacg
gatcaagagctgttcggcatgcaaaggcggcgctcgaaggttaaaactaggaaagcgggc
cagagggtaacggccttttcggatctcaatataggcgattacgtggtgcatgaaaattat
gggataggccaatacatgggcatcaaaaaacttacggtggaaggtaaatcgagagattat
ctttttatacgctatgctgatggtgataatctgtatgtgcccaccgatcgaatgtcgttg
gtgcagcgttatatcggcggagacggagcatcgcccaggttatccaaactgggcggcagc
gaatggtccaagaccaaggccaaggtaagagaatcggttaggaaaatggctggcgagtta
ttgaagctgtacgcctcgcgatatacaaccaagggtcatgcctttagccctgatactgtt
tggcaggctcaactggaggaatcgtttccatatcaggaaacgcctgatcagttacaggct
atagaagagataaaagccgatatggaaagcgataaacctatggacagactgctgtgcggc
gatgtcggttacggtaagactgaagttgcattaagagcagcttttaaggctgtaatggat
ggcaagcaggtggccgtattagtgcctacgacggtcttagcccaacagcattacaatacc
tttaccaatagattggccggttttcctataaaggtggatgttataagccgatttagaagc
gttcaggaacagaaggatatagtaaaggggcttaaaagcggcgatatcgatataataata
ggaactcatgctttgctgagcagcaatgttaaattccacgatttaggacttcttatcgtt
gatgaggaacagcggtttggggtaagccataaagaagccataaagagatttaaaaacaac
gtagacgtgctcacccttactgctacacctatacccaggacactgcatatgtcattatcc
ggcataagggatataagtataatagaaacgcctccggaagatagatatcctgtgcagact
tatgtcgtagaatatgacgaaaatattataagagatgctatattaaaagagcttggcaga
ggaggacaggtatatttcgtatataatagaatcaattccatagatgtcatggctatacat
ttgcatgaactggttcccgaggcccgtatagccgttgctcatggacgtatgggggatgat
aagctggagcgcgttatgatggattttatggatggatattatgacgtgctgctctgcacc
actataatagagacgggtttggatatacccaatgtcaatacccttatagtctacgatgcc
gatcatttcggattagcgcaactgtatcaattgcgcggaagagtggggcgcagcaacagg
ctggcgtatgcgtattttacttataagaaagaccgtgtattgactgaagaagccgaaaaa
cgtttgcatgctattacggagtttaccgaattcggttccgggtttaagatagctttgaga
gatcttgagataagaggtgccggtaatctgctgggggccgaacaacatggccatatggcg
gctgtcggatatgacatgtactgcaagctcttagaagaagccatagctcagctaaaagga
gagacccctgaagaagagatagatacgtctatagaaataaagctggatgcctatataccg
gatgattatgtaccatcagaggcacagcgcatagaaatatataagcgtataatgtccata
agcgacatagaagaggaatatgatgtggaggaagagatagaagacaggtttggcgatata
ccgcagagtgtcaggaatctattgtcgataatgcatataaaactgttatccaagaagata
ggtattgtatctatcgaacaaaagggacatgacatcgtatttacgcttagagatgataaa
aatattgatctaagtggccttataagggttatggatgaatataaaggccgcgttagattt
gcggctactgatcaaccatcattttatttcaacattggcaatgaaacctctgaaggtata
ttaaaggatataagggaattactggagaaaactatgggtttacaagcagtggcatgttaa
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