Myxocyprinus asiaticus (Chinese sucker): 127431169
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Entry
127431169 CDS
T08782
Name
(RefSeq) collagen alpha-1(XXVII) chain A-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
127431169
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
masi00536
]
127431169
Glycosaminoglycan binding proteins [BR:
masi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127431169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
127431169
NCBI-ProteinID:
XP_051537430
LinkDB
All DBs
Position
40:complement(36824507..36909877)
Genome browser
AA seq
1857 aa
AA seq
DB search
MNLATRRRDRRTSRLVAKRALLLCTLLYLTSFGFTQVLFEDVDVLQQLALRAELGSRAVP
AGVISIRSGVILTTQARVTTATHTVFPSELFWNCTIVLSVRSHRLNSAFLFSVHSGNQIQ
LGLEISPGKLTFHAGPGNTAIFPYDLHDGHWHHLAFVLNGQSVTLHSPCVEIDAGVTKKL
PVLPEPLNPNGTFRLGGISFLLPGAVAFEGAVCQFDVVPSAQAQQNYCSAIRRQCRENDT
YRPGPPPALLPLPSRHAPPLLAQTLPPNHTFSITPTSFLWMSINSAGGSSAVKVSDAVPK
LSSTTPPPLPLIQTGFETPLSTIYLHSVTPNPTLRTLKSPKPTARKTAAVWLTPTKLSAS
KPTPGKLSLKPTTTKSSGPKPMIARPTSSKLGSSKTSGPKPTPPKPSKSSVAKSTAAKPT
AKKPTLAPKPTKINPTKKILTGAPSVSPYKKQNDIKKPQSDPEPSASKRPSTAPNKKPLP
PKTNTQNHSLPNPKSTLLTTKTQQKSLPTPKSTLFTTAAPSKPKINLPTPNIPEKSLTTP
KSTLLTTTAPSKPKINLPTPKSTLPTTAASSKPKTHLPTPKNNPNKPKTPPHYVTPRTPK
STTQSVTPPALDDFQSLEVDPTWVSLLVGPPGQKGDPGLMGIPGPPGKPGQPGKRGPRGP
PGPHGKPGRPGPPGLKGKKGDPGLSPGKAPKGDKGDPGLLGPVGLVGLEGRKGQKGHPGP
PGLPGEPGEQGPVGSAGAKGYPGRQGLPGPVGPLGPKGARGFIGIPGLFGLPGSDGERGI
PGPPGKRGKMGRPGFPGDFGERGPPGLDGEPGVIGAPGPLGVPGLIGDMGPAGIVGLPGP
NGLKGVPGNMGEPGLKGDKGDVGIPGEHGEIGFQGDKGVQGLPGLPGPRGKPGSQGKPGE
RGPSGLPGPPGPEGFPGDIGKPGHNGPEGPKGKPGARGLPGPRGAAGREGDAGPVGPPGP
IGLEGLMGNKGFPGAIGLEGVKGEQGVTGQAGPMGERGLVGFIGPTGEAGLAGEKGDRGE
MGLPGPPGEKGSTGHPGTPGESGPPGPAGSPGPPGSHGLIGIRGPKGRRGPRGPDGVTGE
PGTEGKKGPDGPPGKIGFPGNEGKIGESGEVGPKGFTGVQGPSGATGDKGIAGEPGPPGA
PGTIGPPGNPGLNGPAGKVGDLGLPGEPGEKGSLGPAGSAGAAGLIGQRGEPGLEGEAGP
SGPDGTKGEKGDMGSEGEQGVRGEPGIKGKDGPLGDPGLTGVRGPEGKPGRNGERGKPGL
KGDKGNIGHLGETGTMGKIGPIGTTGPKGSRGTIGHLGAPGRMGLQGDPGISGYEGHHGP
QGPMGPPGPKGEKGEQGDDGKVEGPTGPTGLRGPIGKRGDRGESGDPGYVGQQGVDGLRG
KPGAPGLPGNPGPHGTQGPKGSKGEQGQKGKQGQQGERGSRGSPGVVGLPGPKGSVGREG
QEGVPGMDGIPGKDGSKGIPGDQGDDGEFGLHGKPGAPGKAGVPGLPGDQGSFGPKGERG
LPGHAGPSGKRGFKGGMGLPGTQGDRGPKGQPGDIGEPGFPGILGMFGPKGPPGDFGPKG
IQGPKGPQGSMGRGGIAGPVGVIGPIGNLGPRGDTGSKGEMGVQGPRGAPGPHGPPGPPG
PPAVPLNFKQDGLGVAMPVFMETHTHKIEGRGLLEMPMLDQAPEILRTLHYLSSLIHSLK
NPLGTQDHPARLCKDLHDCQNTLHDGTYWIDPNLGCSSDSIEVTCNFTGGGRTCLRPITT
AKLAFSVGRVQMNFLHLLSAGAEQRITIHCLNVTIWSYTPSQPPSENIVRFYAWTGEMLE
PDVLADTCWQVNGRWQQAHFLFRVSDPSLLPVVRISNLPKMTATSRFHLEVGPVCFL
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atgaatttagcgacccgaaggagagaccgcagaacctctcgtctcgtggcaaagagagct
cttcttctgtgtactctactttatttaacttcttttggattcacccaagtactctttgaa
gatgtggacgtgttgcagcagttggctctgcgtgctgaactgggttctcgcgccgttccc
gctggtgtcatctccatccgctctggagtcatccttacaacacaggcacgagttaccacg
gcgacacacaccgtgtttccatcagaactcttctggaattgcactatcgtcttgagtgtc
cgatctcaccgcctgaactcagcatttctcttttccgtccactctgggaatcagattcag
ctcggactggaaatttcgccaggtaaactaacgtttcacgctgggcctgggaataccgcc
atcttcccttacgacctccatgatggacactggcatcatctagcatttgttctgaatgga
caatcagtgactttgcactctccctgcgtggagattgatgctggagttacaaagaaactc
cctgttcttcccgaacctttaaatcctaacggaacgttccgcttgggtggtatcagtttt
ttgcttccaggtgcagtagctttcgagggggcggtctgccagtttgacgttgtgccctcg
gcacaggcgcagcagaattactgtagcgccattcgcaggcagtgcagagagaatgacacc
tacaggccgggtccgccccctgctctcttacccctcccatccagacacgccccaccacta
ttggcccagacattaccaccgaatcacactttctctatcactcctactagtttcctttgg
atgtccataaattccgcaggaggttcttctgctgttaaagtgagtgatgctgtccctaag
ctttcttctaccacacctccaccccttcccctgatacaaacaggatttgaaactccatta
tctactatatatttacattcagtcaccccaaatcctacactcaggacactcaaaagtccc
aagccgactgcacgaaagacggcagcagtctggcttaccccgacaaaattgagtgcatcc
aaacccactccaggaaaactttctctaaaacctactacaacaaagtcttctggaccaaag
cccatgattgctagaccaacttcatccaaactcgggagttcgaaaacaagtggacccaaa
cctacgccaccgaagccttccaaatcctcagttgcaaaatcgactgccgcaaagccgaca
gcaaagaagcccactcttgcgccaaagcccaccaaaatcaaccctacaaaaaagatttta
actggtgctccatctgtcagtccttacaagaaacaaaatgacattaaaaaaccacaatct
gacccagaaccaagcgcctccaaaagaccctctacagcaccaaacaaaaagccactcccg
cccaaaaccaacacccaaaatcactctctaccaaacccaaaatccactttgctgaccacc
aaaacacagcaaaaaagcctgccaacccccaaatcaactctattcaccactgctgcccca
agcaaacccaaaataaacttgccaaccccaaacatccctgaaaaaagccttacaacccca
aaatccactctactgaccaccactgccccaagcaaacccaaaataaacttgccaaccccc
aaatccactctacccaccaccgctgcctcaagcaaacccaaaacacatctgccaacccca
aaaaacaatcctaacaaaccaaaaacaccaccgcattatgtcacacctcgtactccaaag
tccaccacccaatctgtgactcccccggctttggacgacttccagagcttggaggtggac
ccaacgtgggtttcgctactggttggaccgccgggacaaaaaggagatcctgggctaatg
ggaattccgggacctccagggaaaccagggcagccagggaagagaggacctcgggggccc
cccggaccacacgggaagccaggtcgacccggtcctccagggttgaaggggaaaaaagga
gaccctggactctctcctggaaaagcaccaaaaggagataaaggagaccctggtctgctc
ggtcctgttggtttagtcggtttggaaggccgtaagggacaaaaaggccatccaggtcct
ccaggcctccccggggaaccaggtgaacagggtcctgttgggagtgctggagccaaaggc
tatcctggcaggcagggtttacctggaccagtagggcctcttgggccgaaaggtgctcgg
ggtttcattggaatccctggactttttggtttacctggatctgatggtgagagaggtatt
cctggtccaccagggaagaggggcaagatgggtaggccgggatttccaggtgattttgga
gagagagggccaccaggacttgatggagaaccaggtgtgattggagctcccggtcctctt
ggtgttcctggattgattggtgatatgggcccggctggcatagttggtttaccgggacca
aatggactgaaaggtgtaccagggaacatgggcgagcctggactgaaaggtgataagggt
gacgtggggattcctggagagcatggagagattggattccaaggagacaagggtgttcag
ggtttgccaggattgccagggcctcgaggaaagccaggatcccagggcaaaccaggagag
agagggcccagtggactgcctggtccaccaggacctgagggtttccctggtgacattgga
aaacctggacacaatggacctgagggcccaaagggtaagcctggagcgagaggtttacca
gggccgcgtggagctgccgggcgagagggtgatgcgggtcctgtggggccaccggggcca
atcggactcgagggtctaatgggcaataagggtttccccggggctattggacttgaagga
gtcaaaggcgagcagggagtcacaggtcaggctggccccatgggcgagagaggtcttgtt
ggtttcatcggtcctacaggggaggctgggctagctggagagaagggtgatcgaggagag
atgggtttgcccgggcctccaggagaaaaaggatctacgggtcacccaggaacccctgga
gagagcggcccaccaggaccagcaggcagtccgggcccaccgggatcacatggactcatc
ggcataagaggacctaaaggaagacggggaccgagaggtccagatggtgtgacaggtgaa
cctggaactgaaggcaagaagggtcctgatggtcctcctggaaaaattggtttcccagga
aatgaggggaagatcggggaatctggggaggtggggccaaaaggatttacgggagtccaa
gggccatctggagccacaggagacaaaggaattgcaggagagccaggacctcctggggcc
ccaggaacaattggacctccaggaaatccaggactaaatggccctgctggaaaagttggt
gaccttggacttccaggtgaaccaggagaaaagggctcacttggaccggcagggagtgct
ggggcagctggacttatcggacaacggggagaaccaggtttggagggagaggctggtcca
tctggtcctgatggtaccaagggtgaaaaaggggacatgggcagcgagggcgagcagggt
gtcagaggtgaacctggcatcaagggcaaagatgggccactgggcgaccctggactcacc
ggcgtcagaggtcctgaaggaaaacctggtagaaatggtgagagagggaaaccggggtta
aaaggtgacaaaggtaacatcggtcacctgggagagacaggaaccatgggaaagatcgga
ccaattggaaccaccggaccaaagggctctcgaggaaccattggacatttgggtgctcca
gggcggatggggctgcagggtgatccgggcatctcaggatatgagggtcatcatggacct
cagggtccaatgggacccccaggaccgaaaggtgaaaagggtgaacagggggatgatggg
aaggtggagggcccaaccggtccaacaggactcagaggaccaataggaaagcgaggtgac
aggggcgagtcaggagatccaggatacgtgggccagcagggtgttgatggtttaagaggc
aaacccggtgctcctgggcttcctggcaatcctggtccgcatggaacacaaggccccaaa
ggatccaaaggagaacagggtcagaagggtaaacagggtcaacagggtgagcgtggcagc
agaggatcaccaggtgtggttgggttgcccggtccgaaaggttctgtgggtcgagaagga
caggagggagttcctggcatggatgggattccagggaaagatggaagcaaaggaatacca
ggtgatcaaggagacgatggtgaattcggtttgcatggtaaaccaggtgcccctggcaaa
gctggcgtacctgggttaccaggcgatcagggatcatttggtccaaagggtgagaggggc
cttcccgggcacgctggcccctcaggaaagagagggtttaagggaggaatgggccttcct
ggaacccagggtgaccggggccctaagggccaacctggtgacatcggggaaccgggtttt
ccagggatacttggaatgtttggaccaaaggggccacctggagactttggaccaaagggg
attcagggacctaaaggaccccagggcagcatgggtagagggggtatagctggacctgtt
ggtgtaattggccctattggtaatctaggcccaagaggagatactggcagcaaaggagaa
atgggtgttcagggtcctagaggagctccaggaccgcatggccctccaggacctccggga
ccaccagcagtcccattgaactttaagcaagatggtcttggtgtagccatgccagttttt
atggaaacacacacacacaaaattgagggtcggggtttgttggaaatgccgatgttggat
caagctccagagatattgcgaactctccattacttgagttctctgatccacagtctgaag
aatccactgggcacacaagatcatcctgctcgactctgcaaagacctgcacgactgccag
aacacactccacgatggcacttattggatcgacccaaatctgggctgctcctctgactct
atagaagttacgtgcaacttcacgggtggcggacgaacctgtctcagacccatcaccaca
gccaagctggcattcagtgttggccgtgtccagatgaacttcctgcatttgctgagcgcc
ggagccgagcagcgaatcacaatccactgcctaaacgtgacgatctggagctacaccccc
tcccaacccccatccgagaatattgttcggttttatgcgtggactggagagatgttggag
cctgatgtgttagcagacacatgctggcaagtgaatgggcgctggcaacaagctcacttc
ctgttccgggtgtcagacccctccctacttcctgttgtacgcataagcaatctaccgaag
atgacagccacatcacgctttcacctagaagtcggacctgtttgcttcctgtag
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integrated database retrieval system
