Myxocyprinus asiaticus (Chinese sucker): 127442678
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Entry
127442678 CDS
T08782
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi03013
Nucleocytoplasmic transport
masi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127442678
03015 mRNA surveillance pathway
127442678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masi03019
]
127442678
Enzymes [BR:
masi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127442678
5.6.2.5 RNA 5'-3' helicase
127442678
Messenger RNA biogenesis [BR:
masi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127442678
mRNA cycle factors
Common to processing body (P body) and stress granule
127442678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
YusW
Motif
Other DBs
NCBI-GeneID:
127442678
NCBI-ProteinID:
XP_051556835
LinkDB
All DBs
Position
6:53161692..53224521
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLPNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTATDRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPMGSMN
IPIPFNLVMPPMPPPSYLGQVNGPATGRGAPKGKTGGRGGRQRNRGPGNHGSGQANMPNS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaggcgtatgggccgagctcacagacgctcaccttcctggacacggaggaa
acggagctgctcggggccgacacgcagggctcggagttcgagttcaccgacttcacgctt
cccagtcaaacccagacgcagggccagactcaaagccagctggacaatcaggtgaacggg
cctgatggagttctgccaaacggagaggatgcagtggtgaagaccagtcaacttctggcc
gagctgaactttgaagaagatgaggaagatacttactacactaaagacctgccagtgcac
gcctgcagctattgtggcattcatgacccagcgtgtgtggtctattgcaacaccagcaag
aaatggttctgcaacggccgtggaaacacctctggcagtcatattgtgaaccacttggtg
agggccaaatgtaaggaggtgaccctgcataaagacggcccactgggcgagaccgttctg
gagtgctataactgcggatgccgcaacgtcttcctgcttggcttcatcccggctaaagcc
gattctgtagttgtgcttctgtgcaggcagccatgtgcgagtcagagcagtctgaaggac
attaattgggacagctctcagtggcagcccctgattcaggaccgctgtttcctgtcctgg
ctggtaaagatcccgtctgagcaggagcagctgagagcccgtcagatcaccgctcagcag
atcaacaaacttgaggagctctggaaggaaaacccgacagcaaccctggaggatttggag
aaacctggagtggatgaggaacctcagcatgttctacttcgctatgaagatgcataccag
taccagaacatttttggcccactcgtgaaactagaggctgactacgacaagaaactcaaa
gagtcccaaactcaagacaatataacagtaaggtgggacttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcagggagat
gagatctgtttgcgctataaaggagacttggctccactctggaaaggcattggacacgtc
atcaaagttccagacaattatggagatgagattgctattgagctgcgcagcagtgcaggc
gcacctgtggaggtgccacataacttccaggtggattttgtctggaaatccacatctttt
gaccgaatgcagagtgccctgaagacgtttgctgttgacgagacctccgtatctggttac
atctatcataagttgttgggtcacgaagtggaggatgttatcattaaatgccagctgccc
aaacgcttcactgcacagggtctgccagatctcaaccactcacaggtctatgctgtgaag
acggtactccagagacctcttagtctaatccaaggacctccaggaactggcaagactgtc
acctctgccaccattgtctaccatctggccagacagggcaatggtccagtgctggtttgt
gctccgagtaacatcgctgtggaccagctgacggagaagatccatcagacgggactgaag
gtggttcgtctgtgcgctaagagtcgtgaggccatcgactcacctgtgtcgttcttggct
ctgcacaatcagatccgcaacatggacagcatgccagagttgcagaaactgcagcagctg
aaggacgagaccggcgagctgtcgtcctctgatgagaaacgctaccgagctctgaaacga
acggctgagagagagctgctcatgaatgcggacgtgatctgctgcacgtgtgtgggtgca
ggcgacccccgacttgctaaaatgcagttccgatccattctcatcgatgagagcacgcag
gccacggagcccgagtgcatggtgccagtggtgcttggggccaaacagctgattttggtt
ggtgatcactgtcagctgggtccagtggtgatgtgtaagaaagcagctaaagcgggtctg
tctcagtctctgtttgagcgtctggtggttctgggcatcagaccaatccgtctgcaggtg
cagtaccgcatgcaccccgcgctcagcgctttcccttccaacatcttctacgaaggatct
ctgcagaacggagtcacagccactgatcgcatcaagaaaggttttgacttccagtggcct
cagccagataagcccatgttcttctacgtgactcaaggccaggaggagatcgcaagctct
ggcacctcctatctcaacaggactgaagcttctaacgtggagaagatcaccacacgactg
ctgaaggccggagccaaacccgatcagattggcatcatcacaccgtacgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggctccctacacaccaaactctaccaggaa
gtggagattgccagcgtggacgccttccagggcagagagaaagacttcatcattctgtct
tgcgtcagagctaatgaacaccagggaatcggcttcctcaatgacccacgccgtctcaac
gtggcccttaccagagccaggtatggtgtgatcattgtgggcaatcctaaagctctgtct
aaacaacctctgtggaaccacctgctcaactactataaagagcagaaagttctggtggag
gggcctctgaataacctgagagagagtctcatgcagttcagcaaaccacgcaagctcgtc
aataccatcaaccctggagctcgtttcatgagtaccgccatgtatgacgcaagagaggcc
atgattcctggatctgtgtatgatcgcagcagcactggacgtccatctaatatgtacttc
cagacccatgatcaggttggaatgatcgggaccgggccaaacccaatgggctccatgaac
ataccgatcccattcaacctggtcatgccgcccatgcctccgcccagttacttgggtcag
gtgaatggaccggctactggtcgtggtgctcctaaaggcaagactgggggtcgtggaggt
cgtcagaggaaccgtggcccaggtaaccatggcagtgggcaggccaacatgccgaacagt
caggccagtcaggatctggtgtctcagcccttctctcagggtcctctgacccaaggctac
atcaccatgagccaaccgtcacagatgagccagcctggactatctcaacctgaactttca
caggacagttatctgggtgatgagttcaaatcgcagatggatgtggcgctctctcaggat
tccacctaccagggtgaacgggcataccaacatggaggagtgactggactctcacagtac
tag
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integrated database retrieval system
