Massilia sp. WG5: AM586_13500
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Entry
AM586_13500 CDS
T04122
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
masw
Massilia sp. WG5
Pathway
masw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
masw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AM586_13500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
masw03400
]
AM586_13500
Enzymes [BR:
masw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AM586_13500
DNA repair and recombination proteins [BR:
masw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AM586_13500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
DUF4217
SNF2-rel_dom
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ALK97115
LinkDB
All DBs
Position
complement(124522..127980)
Genome browser
AA seq
1152 aa
AA seq
DB search
MPFDLKKHLPKPGQRFALPQLHGSSDAYALARAALELKANKQMLTVIVANASDGQRLLDE
IPWFADGKLACHLLPDWETLPYDAFSPHQDLVSERLATLHEIRNGQCDVLVVPATTALVR
LAPPSFLAAYTFFFRQGENLDEAKLKAQLTLAGYSHVTQVMSPGEYSVRGGLIDLFPMGS
ALPYRLDLFGDEIETIRTFDADTQRSLYPVKEVRLLPGREFPMDEAARTAFRGRWRERFE
GDPSRSPVYKDIGSGIASAGIEYYLPLFFDETATLFDYLPHESPLALVGDIEAAIQRFWA
DTESRYKFLKADRERPILEPKEIFLGAEDFFVCAKPHGRWVIARDAGTAASELSAPVPDI
AVNRRLEDPLANLRSYLMRVTQGDDLRVMICAESNGRRETLQQYFNEYKLDLAPIEGFEG
LRASGARITLGVAPLQAGFELLEAASGRLVFITETELYAGTGRRAGKKKQEASSQVESMV
RDLSELKIGDPVVHINHGIGRYMGLISMDLGEGDTEFLHLEYAKETKLYVPVSQLHVISR
YSGASPEDAPLHTLGSGQWDKAKKKAAEQVRDTAAELLNLYARRAARQGHSFEYSSLDYE
NFAQSFGFDETPDQAEAIANVIKDMTSGRPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQ
VAILAPTTLLAEQHAQTFANRFADWPVKIAELSRFRTGKEINNAIKGMADGTVDIVIGTH
KLLSPDVKFTRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLR
DFSVIATAPQKRLAIKTFVRSEDGSIIREAVLRELKRGGQVYFLHNEVETIENRLAMLRE
LLPEARIGVAHGQMHERELESVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKF
GLAQLHQLRGRVGRSHHQAYAYLLVNDALNMTKQAQRRLDAIQAMEELGSGFYLAMHDLE
IRGAGEVLGENQSGEMLEIGFQLYSDMLNEAVKALKAGREPDLAAPLSSTTEINLHVPAL
LPADFCGDVHERLSIYKRLANCETQDRIDDMQEELIDRFGKLPDAVKALIETHRLRITAK
QVGIVKIDAHAESASLQFMEKPPIDPIRIITLIQKNRHIKLAGQDKLRITAAMPDLPARV
NQVKQTIKQLLA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcgacctgaaaaaacacctccccaaacccggacaacgttttgccctgccgcag
ctccacggctcctccgacgcctacgcgctggcgcgcgccgcgctcgagctgaaggcgaac
aaacagatgctgaccgtgatcgtggcgaacgccagcgacggccagcgcctgctcgacgag
attccctggtttgcggacggcaaactggcctgccacctgctgcccgactgggaaaccctg
ccctacgacgcgttctcgccgcaccaggacctggtatcggaacgcctggcgaccctgcac
gagatccgcaacggccagtgcgacgtgctggttgtgccggccaccaccgcgctggtgcgc
ctggctccgccttccttcctggcggcctataccttcttcttccgccagggcgaaaacctc
gacgaggcgaagctgaaggcccagctgaccctggccggctacagccacgtgacccaggtc
atgtcgcccggcgagtactcggtgcgcggcggcctgatcgacctgttcccgatgggctcc
gcgctgccctaccgcctcgacctgttcggcgacgagatcgagaccatccgcaccttcgac
gccgacacccagcgctcgctgtacccggtcaaggaagtgcgcctgctgccgggccgcgaa
ttcccgatggacgaggcggcccgcaccgccttccgcggccgctggcgcgaacgcttcgag
ggcgatccgagccgctcgcccgtctacaaggacatcggcagcggcatcgcctcggccggc
atcgaatactacctgccgctgttcttcgacgagaccgcgaccctgttcgactacctgccg
cacgaatcgccgctggccctggtcggcgacatcgaagccgcgatccagcgcttctgggcc
gacaccgaatcgcgctacaaattcctgaaggccgaccgcgagcgtccgatcctggagccg
aaggagatcttcctcggcgccgaggatttcttcgtctgcgccaagccgcacggtcgctgg
gtcatcgcccgcgacgcgggcacggcggcctccgaactgtcggcgccggtccccgacatc
gccgtcaaccgccgcctcgaggacccgctggccaacctgcgctcttacctgatgcgggtg
acccagggcgacgacctgcgggtgatgatctgcgcggagtcgaacggccgccgcgagacc
ctgcagcagtacttcaacgaatacaagctggacctggccccgatcgagggcttcgaaggc
ctgcgcgcgagcggcgccaggataacgctgggcgtcgccccgctgcaggcgggcttcgag
ttgctggaagccgcgagcggccgcctggtcttcatcaccgagaccgagctgtatgccggc
accggccgccgcgccggcaagaagaagcaggaagccagctcgcaggtcgagtcgatggtg
cgcgacctgtcggagctgaagatcggcgacccggtcgtgcacatcaatcacggcatcggc
cgctacatgggcctgatcagcatggacctgggcgaaggcgataccgagttcctgcacctg
gaatacgccaaggagaccaagctgtatgtgccggtgtcgcagctgcatgtgatctcgcgc
tactccggggcctcgccggaagacgcaccgctgcacacgctcggctccggccagtgggac
aaggccaagaaaaaagccgccgaacaggtgcgcgacaccgccgccgagctgctgaacctg
tacgcccgccgcgccgcgcgccagggccacagcttcgagtattcgagcctcgactacgag
aacttcgcccagagcttcggcttcgacgagacgccggaccaggccgaggcgatcgccaac
gtcatcaaggacatgacctcgggccgcccgatggaccgcctggtgtgcggcgacgtcggt
ttcggcaagaccgaggtcgcgctgcgcgccgccttcatcgccgtcatgggcggcaagcag
gtggcgatcctggccccgaccaccctgctggccgagcagcacgcgcagaccttcgccaac
cgcttcgccgactggccggtcaagatcgccgagctgtcccgcttccgcaccggcaaggag
atcaacaacgcgatcaagggcatggccgacggcaccgtcgacatcgtgatcggcacccat
aagctgctgtcgccggacgtgaagttcacgcgcctgggactagtgattatcgacgaggag
caccgcttcggcgtgcgccagaaagaggcgctgaaggccctgcgcgccgaggtggacgtg
ctgaccctgacggcgacgccgatcccgcgtaccctgggcatggcgctggagggcctgcgc
gacttctccgtgatcgccaccgcgccgcagaagcgcctggcgatcaagaccttcgtgcgt
tccgaggacggttcgatcatccgcgaggcggtgctgcgcgaactgaagcgcggcggccag
gtctacttcctgcacaacgaggtcgagaccatcgagaaccgcctggccatgctgcgcgaa
ctgctgccggaggcgcgcatcggcgtggcccacggccagatgcacgagcgcgagctggag
tcggtaatgcgcgatttcgtggcgcagcgcttcaacatcctgctgtgcacgaccatcatc
gagaccggcatcgacgtgccgaccgcgaacaccatcatcatgcaccgcgccgataaattc
ggcttggcccagctgcaccagctgcgcggccgggtcggccgttcgcaccaccaggcctat
gcctacctgctggtgaacgacgccctgaacatgaccaagcaggcgcagcgccgcctcgac
gcgatccaggcgatggaagagctgggcagcggcttctacctggccatgcacgacctcgag
atccgcggcgccggcgaggtgctgggcgagaaccagtccggcgaaatgctggagatcggg
ttccagctctactccgacatgctgaacgaggcggtgaaggcgctgaaggccggccgcgag
ccggacctggccgcgccgctgtcctcgaccaccgagatcaacctgcacgtgccggccctg
ctgccggccgacttctgcggcgacgtccacgaacgcctgtcgatctacaagcgcctggcg
aactgcgagacccaggaccgcatcgacgacatgcaggaagagctgatcgaccgtttcggc
aagctgccggacgcggtgaaggccctgatcgagacccaccgcctgcgcatcaccgcgaaa
caggtcggcatcgtcaagatcgatgcacatgcggagagcgccagcctgcagttcatggag
aagccgccgatcgacccgatcaggatcatcacgctgatccagaagaaccgccacatcaag
ctggccggccaggacaagctgcgcatcacggccgcgatgccggacctgccggcacgcgtg
aaccaggtcaagcaaaccatcaaacaactattagcgtaa
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