Massilia sp. YMA4: DPH57_05020
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Entry
DPH57_05020 CDS
T05528
Name
(GenBank) hypothetical protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
masy
Massilia sp. YMA4
Pathway
masy00040
Pentose and glucuronate interconversions
masy01100
Metabolic pathways
masy02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
DPH57_05020
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
DPH57_05020
Enzymes [BR:
masy01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
DPH57_05020
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pectinesterase
Beta_helix
Big_5
Big_2
3keto-disac_hyd
Motif
Other DBs
NCBI-ProteinID:
AXA90589
UniProt:
A0A7U6B3H0
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All DBs
Position
1145994..1149560
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AA seq
1188 aa
AA seq
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MPREADMRPLPSIAALAAVILLLATASHAADATDPARQAAPPDGWASQAGGTLGGSTAPA
SQVYTVANRAQLLAALYNGGTNAKIIKLTGIVDMSEGQPFTSSADQAARGAVRLKSNTTL
IGAGANAGIVNGHILVSNASQVIIRNLKLVNACDVGPVWDPNDGATGNWNAAFDAIGVSN
SDHVWVDHVSFTDAPLTDAFLPVENGHVRQCHDGALDITNGSDYVTVSYNLFEQHNKNNL
VGGSDSASGDEGRLRVTFSNNVFRDVASRAPRVRYGQVHLFNNYFSGSKTHPVYPVSYSV
GVAHAAKILAQNNLFEVVGAHSCGDVVKDFGGAVPGAFRDSGSLLNGAPLGACGVSASVA
WTPPYPFSVRPPSLVKANALAQAGGGKLQSAVTGTGSTTIDTGPVGACPPSGLYFCDDFQ
AGTAAQWDLLPLPGPNGAFRVQDEVAGGANKLLQYTAASTGGVLALLKPGALAAVPGGDY
YVEARIRPLTNGTTGNKQLYLLTRYVDANNWYGAGLNVQSSTASTQVEIARMLAGSLSRP
KQVKKPIAQDGPFYTVRFELVGSTLTVYLDGENLGSVTDEAFAARGLVGLYTANKSFQID
DVRIGDPARKPAQLTLEPGIASIEAEAGDAPYRLSVNAVAPDGGADSFTATSSDPAVASV
TQDGNAVAIAPLAAGSAEIVLRSGSDPALMRTIAVSVAPGFEQPTQTYGLERATLPAPAG
GVEPVDTPLRLTFDTPPTLGSGSVRVYRKIDDVLVDVVRTSGETDVLGYPGQAQVRKVRT
APIRIDGNTATIHLHGNKLAYGTEYYVAVADGVFTNTKLGGVPFTGIGKAANWTFTTRAA
APDGTTFVVDDDGSAHFRTVQGALNHAMQYVPKATPVTIGVRNGTYDELLYLRGKDNVTI
VGETRDGVVIRYTNNETLNPGTGASQAPASSGTSGGRALLLVEGADMLRLQRLTLNNTTL
RAAGMAGQAETLYFNSDAGRLIAQDAAFLSEQDTLNLKGWSWFYRTLVAGNVDFIWGGSR
AALFEDSEVRSVGDTTSATSGGYVLQARVPAATDKGFVFLNSRLTHGPGPGPRHGDVPAG
ATYLARSPGGTASWDNIAFIHCRMDRHVAPAGWAGQGVNGQPAPHPATPTATSGWREYGT
MDLAGNPLDLSARVGGYQLRAHEVAAGFASRAQVFAGYGGGAGWEPQP
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgccaagggaggctgacatgcgcccattgccatcgatcgcggcactggccgccgtaatc
cttcttctagccacggcaagccacgccgccgacgcgaccgaccccgcgcgccaggccgcg
ccgccggacgggtgggccagccaggcgggcggcaccctgggcggctcgaccgcgccggcc
agccaggtgtacacggttgccaaccgcgcccagttgctggccgcgctgtacaacggcggc
accaatgccaagatcatcaagctgaccggcatcgtcgacatgagcgagggccagccgttc
accagcagcgccgaccaggccgcgcgcggcgccgtgcgcctgaagagcaacacgaccctg
atcggcgccggcgccaacgccggcatcgtcaacggccatatcctggtgtcgaacgcgtcg
caggtcatcatccgcaacctgaagctggtcaacgcctgcgacgtggggcccgtctgggat
ccgaacgacggcgccacgggcaactggaacgccgcgttcgacgcgatcggcgtctccaac
tcggaccacgtctgggtcgatcacgtcagcttcaccgacgccccgctgacggacgcgttc
ctgcccgtcgagaacggccacgtgcgccaatgccacgacggcgcgctggacatcaccaac
ggctcggactacgtaacggtgtcgtacaacctgttcgagcagcacaacaagaacaacctg
gtcggcggcagcgacagcgccagcggcgacgaaggccgcctgcgcgttaccttcagcaac
aatgtgtttcgcgacgtggccagccgcgcgccgcgcgtgcgctacggccaggtccacctg
ttcaacaactacttcagcggctcgaagacgcatcccgtctacccggtgtcgtacagcgtc
ggcgtggcgcatgcggcgaagatcctggcgcagaacaatctgttcgaggtggtgggcgcg
cactcttgcggcgacgtggtgaaggacttcggcggcgcggtgccgggcgcgttccgcgac
agcggctcgctgctgaacggcgcgccgctgggggcctgtggcgtgtcggccagcgtggcc
tggacgccgccttacccgttcagcgtgcgcccgcccagcctcgtcaaggccaacgcgctg
gcgcaggccggcggcggcaagctgcagagcgcggtgacgggcacgggcagcacgacgatc
gataccggtcccgtcggcgcttgcccgccgtccggcctgtacttctgcgacgacttccag
gccggcacggcggcccagtgggacctgctgccgctgcccgggccgaacggtgcctttcgc
gtgcaggacgaagtggccggcggcgcgaacaagctgctgcagtacacggccgccagcacc
ggcggcgtgctggcgctgctgaaacccggcgcgctcgcggccgtgccaggcggcgactac
tacgtcgaggcgcgcatccggccgctcaccaacggcaccaccggcaacaagcagctgtac
ctgctcacgcgctacgtcgacgcgaacaactggtacggcgccggcctgaacgtgcagagc
agcacggccagcacccaggtcgagatcgcgcggatgctggcggggagcctgagccggccc
aagcaggtgaagaagccgatcgcgcaggacgggccgttctacacggtgcgcttcgaactt
gtcggcagcacgctgacggtgtacctggatggcgaaaacctggggtcggtcaccgacgag
gccttcgcggcacgcggcctggtcggcctgtacacggcgaataagtcgttccagatcgac
gacgtgcgcatcggcgaccccgccaggaagcccgcccagctgacgctcgagccaggcatc
gccagcatcgaggcggaggcgggcgacgcgccataccgcctttcggtcaacgcggtggcg
ccggacggtggcgccgacagcttcacggcgacgtccagcgatccggcggtggccagcgtg
acgcaggacggcaatgcggtcgcgatcgcgccgctggccgccggcagtgccgagatcgtg
ctgcgctccggctcggacccggcactgatgcggacgatcgccgtcagcgtcgccccgggc
ttcgagcagcccacgcagacctatggcctggagcgcgccacccttccggccccggcgggc
ggggtggaaccggtcgacacgccgctgcggctgacgttcgacacgccgcccacgctgggc
agcggcagcgtgcgcgtgtaccgcaagatcgacgatgtgctggtggacgtggtgcgtacc
agcggcgagaccgacgtgctgggctaccctggccaggcccaggtgcgcaaggtgcgcacg
gcgccgatccgcatcgacggcaacacggccacgatccacctgcacggcaacaagctggcc
tacggcaccgagtactacgtggcggtcgccgacggcgtgttcaccaacacgaagctgggc
ggcgtgccgttcaccgggatcggcaaggccgccaactggacgttcacgacccgggccgcc
gcgcccgacggcaccaccttcgtggtggacgacgacggcagcgcccacttccgcaccgtg
cagggcgcgctgaaccacgcgatgcaatacgtgccgaaagccacgcccgtcacgatcggc
gtgcgcaacggtacctacgacgagctgctctacctgcgcgggaaggacaacgtcaccatc
gttggcgagacccgcgacggcgtcgtgatccgctacaccaacaacgagaccctgaacccc
ggcaccggcgccagccaggctccggccagcagcggcacgagcggcggccgcgcactgctg
ctggtggaaggggccgacatgctgcggctgcaaaggctcacgctgaacaacaccaccttg
cgtgcggccggcatggccggccaggccgagacgctgtacttcaacagcgatgccggccgc
ctgattgcgcaggacgcggccttcctcagcgagcaggacacgctgaacctgaagggctgg
tcctggttctaccgcacgctggtggcgggcaatgtcgacttcatctggggcggcagccgc
gccgccttgttcgaggacagcgaggtccgttcggtgggcgacaccaccagcgccaccagc
ggcggctacgtgctgcaggcgcgcgtgccggcggccacggacaagggcttcgtgttcctc
aacagccgcctgacgcacggccccggcccggggccgcgccacggtgacgtgccggccggc
gccacctacctggcgcgcagcccgggcggcacggccagctgggacaatatcgccttcatc
cactgccgcatggaccggcacgtggcgccggccggatgggccggccagggcgtgaacggc
cagccggcgccccatcccgccacgccgaccgctacgtcgggctggcgcgaatacggcacg
atggacctggccggcaacccgctcgacctgtccgcccgcgtcggcggctaccagctgcgc
gcgcacgaggtggcggccggtttcgccagccgcgcccaggtgttcgcggggtatggcggc
ggcgcggggtgggagccgcagccgtaa
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