Massilia sp. YMA4: DPH57_19260
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Entry
DPH57_19260 CDS
T05528
Name
(GenBank) pyridoxal-dependent decarboxylase, exosortase A system-associated
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
masy
Massilia sp. YMA4
Pathway
masy00300
Lysine biosynthesis
masy00470
D-Amino acid metabolism
masy01100
Metabolic pathways
masy01110
Biosynthesis of secondary metabolites
masy01120
Microbial metabolism in diverse environments
masy01230
Biosynthesis of amino acids
Module
masy_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
DPH57_19260
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
DPH57_19260
Enzymes [BR:
masy01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
DPH57_19260
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
AXA93089
UniProt:
A0A7U5Y142
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All DBs
Position
complement(4497329..4498576)
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AA seq
415 aa
AA seq
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MNAPAPKLPPQHAPLTQFAVAHDCLLVGGVPLPRLAQRVGQTPFYAYDRAAITARVAELR
RALPADVHLHYAMKANPMPAVVQHLATLVDGIDVASGGELRVALDTPMAPGHISFAGPGK
SDADLACAIAAGIVLNLESEGEMERAAVIGERLGIAPQVNVRVNPDFELKSSGMKMGGGP
KQFGVDAERVPALLRRIGELGLDFHGFHIFSGSQNLKVAALQEAHEKTFALALRLAADAP
RPPRILNIGGGFGIPYFPGEERLDLPVVGANLARILDEVRPQLQGAQVVIELGRYLVGEA
GVYVCRVVDRKESRGHVYLVTDGGLHHHLSASGNFGQVIRKNYPVVIGNRVHGGAREKAS
VVGPLCTPLDLLADQMELARAEPGDLVAVLQSGAYGMTASPAGFLSHPAALEILV
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgcccgcacccaagctgccgccacagcacgcgccgctgacgcagttcgcggtc
gcgcacgactgcctgctggtggggggcgtgccgctgccccgcctggcccagcgcgtgggg
cagacgccgttctacgcctacgaccgcgccgccatcacggcgcgcgtggccgagttgcgc
cgcgcgctgccggccgacgtgcacctgcactacgcgatgaaggccaacccgatgccggcc
gtcgtgcagcacctggcgaccctggtcgacggcatcgacgtggcctccggcggcgaactg
cgcgtggccctcgatacgccgatggcgcccggccacatcagcttcgcgggacccggcaag
agcgacgccgacctggcgtgcgcgatcgcggccggcatcgtgctgaacctggagtcggaa
ggcgagatggaacgggctgccgtcatcggggaacggctgggcatcgcgccgcaggtcaac
gtgcgcgtcaatccggatttcgaactgaaatcgtccggcatgaagatgggcggcggtccc
aagcagttcggcgtcgatgccgagcgcgtgcccgcgctgctgcgccggatcggcgagctg
gggctggatttccacggctttcacatcttcagcgggtcgcagaatctgaaagtggcggcg
ctgcaggaagcgcacgagaaaacgttcgcgctggcgttgcgcctggcggccgacgcgccc
cgcccgccgcgtatcctgaacatcggcggcggcttcggcattccctacttccccggcgag
gagcggctggacttgcctgtcgtgggcgccaacctcgcccgcatcctggacgaggtgcgt
ccgcaactgcagggcgcccaggtcgtcatcgaactggggcgctacctggtcggcgaggcc
ggcgtgtatgtgtgccgcgtggtggaccgcaaggagtcgcgcggccacgtgtacctcgtc
acggatggcgggctgcatcatcacctgtctgcctccggcaatttcggccaggtgatccgc
aagaattatccggtcgtgatcggcaaccgcgtccacggcggcgcgcgcgaaaaggcctcc
gtcgtgggaccgctgtgcaccccgctggacctgctggccgaccagatggaactggcccgg
gccgagccgggcgacctggtcgcggtgctgcagtccggcgcctacggcatgacagccagc
ccggccggcttcctcagccatccggcggcgctggaaatcctggtgtga
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