Pseudoduganella armeniaca: C9I28_12940
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Entry
C9I28_12940 CDS
T05378
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
masz
Pseudoduganella armeniaca
Pathway
masz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C9I28_12940 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
masz03400
]
C9I28_12940 (ligD)
Enzymes [BR:
masz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C9I28_12940 (ligD)
DNA repair and recombination proteins [BR:
masz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C9I28_12940 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AVR96499
UniProt:
A0A2R4CA30
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All DBs
Position
2961820..2964462
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AA seq
880 aa
AA seq
DB search
MKDSLKTYKAKRNFAITPEPAEGGEEGKEALTFVIQKHWATRLHYDFRLELDGTMKSWAV
PKGPSYDTHDKRMAVHVEDHPISYNDFEGTIPEKQYGAGKVIIWDKGTWHPLGDPRQGYR
DGNLKFELRGHKLRGKWVLVRMKRSGEKQEPWLLIKEKDEYVRSADEFSVIDEMPDSVKA
LGMPTDEPLSPRAAAAEETAREHAAPARKKSAAAKGKAKAKAVPAAPGVRCALPEMFTPE
LATLVDAPPADPQDWLFEIKFDGYRLLARVDGKDVRLITRNGNDWTHKLEPLRAAIEKMQ
LPKGWYDGEIVVHDQSGRPNFGLLQQAFDGVKTSNIVYFVFDAPYLDGYDLREVPLAQRR
ELLKTVMDRAGNDMVRYSAELEAPPAEMVAAACQMGLEGIIGKRRDSTYVSRRSPDWIKL
KCAQRQEFVIGGYTDPKGSRVGIGSLLLGYYGEDGKLHYAGNVGAGFNETTLREITAKLK
KLASDSNPFAPSKSIEKRAHWVKPTLVAEVTFGEWTSSGSIRHSVFQGLRADKKASSVTR
EKAAHMETLVEGTMQTQSAAKTSKPKAAAKPAPTRAPAGLDADSKLPSSLKVTNPDRLID
PASGTTKIGLVRYYALVADLMLEHLKGRPVALVRAPAGVGGELFFQKHSEVGKLPGVKQF
PQELDPDHPSMLEVATMQGLLSSAQWNVVEFHTQNAFGKNYEKPNRMIFDLDPGQGVAWP
QIQEAAQLMRAFLAELGLPAFLKTSGGKGLHVVVPVKPQHDWDTVKGFTKAIVEHMAATL
PDRFAFKSGPKNRVGKIFIDYLRNGRGATTVSAWSARTRAGLGISVPVAWDELAHLRGGD
HWTVATVHDRLDEGNTPWADYAKSAVSITKAMKQLGYSGA
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgaaagattccctcaagacctacaaggccaagcgcaacttcgccatcacgccggaaccg
gccgagggtggcgaagagggcaaggaagcgctgacgttcgtcatccagaagcactgggcg
acgcggctgcactacgacttccgcctggagctggacggtacgatgaagagctgggccgtg
ccgaaaggacccagctacgacacgcacgacaagcgcatggccgtgcacgtggaggaccat
ccgatctcgtacaacgacttcgaaggcacgatccccgagaagcagtacggcgccggcaag
gtcatcatctgggacaagggcacctggcacccgctgggcgacccgcggcagggctaccgc
gacggcaacctgaagttcgagctgcgcggccacaagctgcgcggcaaatgggtgctggtg
cggatgaagcgctcgggcgagaagcaggagccctggctgctgatcaaggaaaaggacgag
tacgtacgctcggccgacgagttctcggtgatcgacgagatgcccgacagcgtcaaggcg
ctgggcatgccgacggacgagcctttgagcccgcgggccgcggcggccgaggaaacggcg
cgcgagcatgccgcgccggcgcgcaagaagagcgcggcggccaagggcaaggccaaggcc
aaggccgtgccggcggcgccaggcgtgcgctgcgccttgccggaaatgttcaccccggag
ctggccacgctggtcgacgcgccgccggccgacccacaggactggctgttcgagatcaag
ttcgacggctaccgcctgctggcgcgggtggacggcaaggacgtgcgcctgatcacccgc
aacggcaacgactggacccacaagctcgagccgctgcgcgccgccatcgagaagatgcaa
ctgcccaagggctggtacgacggcgagatcgtcgtgcatgaccagagcggccggcccaac
ttcggcttgctgcagcaggcgttcgacggcgtcaagaccagcaatatcgtctacttcgtg
ttcgacgcgccttacctggacggctacgacctgcgcgaagtaccgctggcgcagcggcgc
gagctgctcaagaccgtgatggaccgcgccggcaacgacatggtgcgctactcggccgag
ctggaggcgccgccggccgagatggtggcggcggcctgccagatgggcctggagggcatc
atcggcaagcggcgcgactcgacctacgtgtcgcgccgctcgcccgactggatcaagctg
aaatgcgcgcagcggcaggaattcgtcatcggcggctacaccgacccgaagggctcgcgc
gtgggcatcggctcgctgctgctgggctattatggcgaggacggcaagctgcattacgcc
ggcaacgtgggcgccggcttcaacgagacgaccttgcgcgagatcacggcaaaattgaag
aaactggccagcgacagcaatccgttcgcgccgtcgaaatcgatcgagaagcgggcgcac
tgggtcaagcccacgctggtggccgaggtgacgttcggcgaatggaccagcagcggctcg
atccggcattccgtcttccagggactgcgcgccgacaagaaggcgagcagcgtcacccgc
gagaaggcggcccatatggaaacgctggtggagggaaccatgcagacacaaagcgcggca
aagacgagcaaacccaaggcagccgcaaagccggcgccaacgcgcgcacccgcagggctg
gacgcggacagcaagctgccgtcgtcgctgaaggtaaccaacccggaccgcctgatcgat
ccggccagcggcaccaccaagatcggcctggtgcgttactacgccctggtggccgacctg
atgctggagcacctgaagggccgcccggtggcgctggtgcgggcacccgccggcgtcggc
ggcgagctgttcttccagaagcattcggaggtcggcaagctgcccggcgtgaagcagttc
ccgcaggagctcgaccccgaccatccgtcgatgctggaagtggcgacgatgcaggggctg
ttgtcgtcggcgcagtggaacgtggtcgagttccacacgcagaacgccttcggcaagaac
tacgagaagcccaaccgcatgatcttcgacctggaccccggccagggcgtggcgtggccg
cagatccaggaagcggcccagctgatgcgcgctttcctggccgagctgggcttgccggcg
ttcctgaagaccagcggcggcaagggcttgcacgtggtcgtcccggtcaagccgcagcac
gactgggacaccgtcaagggcttcaccaaggcgatcgtcgagcacatggccgcgaccctg
ccggaccgcttcgcgttcaagagcgggccgaagaaccgggtcggcaagatattcatcgac
tacctgcgcaacggccgcggcgccaccacggtcagtgcctggtcggcccgcacccgcgcc
ggcctgggcatctcggtgccggtggcctgggacgagctggcacacctgcgcggcggcgac
cactggacggtggccacggtgcacgaccggctcgacgagggcaatacgccgtgggccgac
tatgcgaaaagcgccgtcagcattaccaaggcgatgaagcagctgggttacagcggcgct
tga
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