Micromonospora aurantiaca: Micau_0884
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Entry
Micau_0884 CDS
T01296
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mau
Micromonospora aurantiaca
Pathway
mau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Micau_0884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mau03400
]
Micau_0884
Enzymes [BR:
mau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Micau_0884
DNA repair and recombination proteins [BR:
mau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Micau_0884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
SLFN-g3_helicase
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADL44448
UniProt:
D9TAZ3
LinkDB
All DBs
Position
882523..886179
Genome browser
AA seq
1218 aa
AA seq
DB search
MLTGLFSAALADPGLARARDLARSGAAQVDGLDLTAPAALRPFAVAAVAADEPAGGAGRP
VLAVTATTREADDLASALGSLLPPEQVAVFPSWETLPHERLSPRSDTVGRRLAVLRRLAH
PDAADAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEPVQLAAGDEADLEEVARRLTDMAYA
RVDLVTKRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIEGVAQMWA
PPCRELLLTPAVRERAAALAAEHPELAEILDKLAEGIPVEGMESLAPALIGADALELLVD
CMPAGTHVLLCDPERIRTRAHDLVRTSEEFLQASWAAAAVGGQAPVDLGAAAFKTLAEVR
TAARALRQPWWTLAPFGLVEADAAPARQPWEDEPAAVDVTPDDAIAVSLAAQPAPLYHGE
TARVVDDLKRWAGEGWSIALVFEGHGPAQRAVEVLRDAGLGARLTEEVPAAPAPGELLVS
CGCLTAGFVDEASKFVLLTGNDVTGGRGTSTRDMRKMPSRRRNTIDPLELKAGDFVVHEQ
HGIGRYVELVQRTVNGASREYLVIEYAPSKRGQPGDRLFVPTDQLDQLSRYVGGEQPTLH
KMGGSDWQKSKARARKAVREIAAQLIQLYAARKASKGHNFGPDTPWQRELEDAFPWQETP
DQLAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQ
QHYNTFAERMSQFPVSIRQLSRFQTPKESEQTLEMVAAGTVDIVIGTHRLLQAATRFKSL
GLVIIDEEQRFGVEHKEHLKTLRASVDVLAMSATPIPRTLEMAITGIREMSTIATPPEER
HPVLTFVGAYDDRQVAASIHRELLRDGQVFYLHNRVESIEKTARRLRELVPEARVAVAHG
QMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQIRGRV
GRGRERAYAYFLYPPEKPLTENAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQ
SGHIEGVGFDLYVRMVGEAVSAFKGEQQEEEAEVKVDLPIDAHLPHDYVAVERLRLEMYR
KLAEARDSERLREVVAEMTDRYGEPPAPVQNLVAVARFRLLARRYGLTDVSMQGKHIRFG
PLPLPDSKQMRLKRYHPDSVYKQALDQVSVPRPSTRRIGGEPLRDQALLEWCGQLLADVL
GKPEELAGVASPAVASGR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccggactcttctccgccgccctggccgacccggggctggcccgggcgcgtgac
ctggcgcgctccggtgccgcgcaggtcgacgggctcgacctcaccgccccggccgcgctg
cgcccgttcgcggtggcagcggtcgccgccgacgagccggccggaggcgcgggccgcccg
gtgctcgcggtcaccgccaccacccgcgaggccgacgacctggcctccgcgctgggcagc
ctgctgccgccggagcaggtggcggtcttcccgtcctgggagacgctgccgcacgagcgc
ctgtcgccccgatccgacacggtcgggcggcgcctcgccgtgctgcgccggctggcccac
ccggacgccgccgacgcgcacggccgcaccgggccgctgcgggtcgtcgtcgcgccggtg
cgctcgctgctccagccgcagctcaagggcctcggcgacctggagccggtgcagctcgcc
gccggggacgaggccgacctggaggaggtcgcccgccggctcaccgacatggcgtacgcc
cgggtcgacctggtcaccaagcgcggcgagttcgccgtacgcggcggcatcctggacgtc
ttcccgcccaccgacgagcacccgtcccgggtcgagttctggggcgacgaggtggaggag
atccgcaccttcgcggtggccgaccagcgcaccatcgagggcgtggcgcagatgtgggcg
ccgccgtgccgggaactgctgctgaccccggcggtgcgggagcgggccgccgcgctcgcc
gccgagcaccccgagctggccgagatcctggacaagctggccgagggcatcccggtcgag
ggcatggagtcgctcgctccggccctgatcggcgccgacgcgctggaactgctcgtcgac
tgcatgccggccggcacccacgtactcctctgcgaccccgagcgcatccgcacccgcgca
cacgacctggtccgtacctcggaggagttcctccaggccagctgggccgcggccgccgtc
ggcggccaggccccggtcgacctcggcgccgccgccttcaagaccctggccgaggtacgc
acggcagcccgcgccctgcgccagccctggtggacgctcgcgccgttcggcctggtcgag
gcggacgcggcgccggcccggcagccctgggaggacgagccggccgctgtcgacgtcacc
cccgacgacgccatcgcggtgagcctggccgcccagccggccccgctctaccacggcgag
accgcccgggtggtcgacgacctgaagcgctgggccggtgagggctggtcgatcgcgctc
gtgttcgaggggcacggccccgcccagcgggccgtcgaggtgctccgcgacgccggtctc
ggcgcccggctcaccgaggaggtgcccgccgcaccggcaccgggcgaactgctcgtgtcc
tgcggctgcctgaccgccggcttcgtcgacgaggcgtcgaagttcgtgctgctcaccggc
aacgacgtcaccggtggccggggcacctccacccgcgacatgcgcaagatgcccagccgg
cggcgcaacaccatcgatccgctggagctgaaggccggcgacttcgtggtgcacgagcag
cacggcatcggccggtacgtcgagctggtgcagcgcacggtgaacggcgccagccgcgaa
tacctggtcatcgagtacgcgccgagcaagcgcggccagcccggcgaccgcctcttcgtc
cccaccgaccagctcgaccagctctcccgctacgtcggcggtgagcagcccacgctgcac
aagatgggcggctcggactggcagaagtccaaggcgcgggcccgcaaggcggtccgcgag
atcgccgcgcagctcatccagctctacgccgcgcgcaaggcgtcgaaggggcacaacttc
ggtcccgacaccccgtggcagcgtgagctggaggacgcctttccctggcaggagacgccc
gaccagctggccgccatcgaggaggtcaagcgggacatggaacagaccgtcccgatggac
cggctgatctgcggcgacgtcggctacggcaagaccgagatcgcggtacgggcggcgttc
aaggcggtgcaggacggcaagcaggtggccgtgctggtgccgaccacgctgctggtgcag
cagcactacaacacgttcgccgagcggatgagccagttcccggtgtcgatccggcagctg
tcccggttccagacgccgaaggagtccgagcagacgctggagatggtcgccgccggcacc
gtcgacatcgtcatcggcacccaccggctgctccaggcggccacccggttcaagtctctg
gggctggtcatcatcgacgaggagcagcggttcggcgtcgagcacaaggagcacctgaag
acgctccgcgcctcggtcgacgtgctcgccatgtcggccaccccgatcccgcgcacgctg
gagatggcgatcaccggcatccgggagatgtccacaatcgccaccccgccggaggagcgg
cacccggtgctcacgttcgtcggggcgtacgacgaccgtcaggtggccgcctccatccac
cgtgagctgctgcgcgacggtcaggtcttctacctgcacaaccgggtcgagtcgatcgag
aagacggcccgcaggctgcgggaactggtcccggaggcccgggtcgcggtggcgcacggc
cagatgggcgaggaggcgctggagaaggtgatggtcggcttctgggagaaggagttcgac
gtcctcgtctgcaccacgatcgtcgaatcaggcatcgacatcccgaacgccaacaccctc
atcgtcgagcgcgccgacctgctcggcctggcccagctgcaccagatccgcggccgggtc
ggccgtggccgggaacgggcgtacgcgtacttcctctacccgccggagaagccgctcacc
gagaacgcgcacgagcggctggcgaccatcgcccagcacaccgaactcggcgccggcatg
tacgtggcgatgaaggacctggagatccgcggcgccggcaacctgctcggcggcgagcag
tccggccacatcgagggcgtcggcttcgacctgtacgtccggatggtcggcgaggccgtg
tccgccttcaagggcgagcagcaggaggaggaggcggaggtcaaggtcgacctgccgatc
gacgcgcacctgccgcacgactacgtggcggtggagcggctgcgcctggagatgtaccgc
aagctcgccgaggcccgcgactccgagcgtctgcgcgaggtggtcgccgagatgaccgac
cggtacggcgagccgcccgcgccggtgcagaacctggtcgcggtggcgcggttccggctg
ctcgcccgccgctacgggctgaccgacgtgtcgatgcagggcaagcacatccggttcggc
ccgctgccgctgcccgactcgaagcagatgcggctcaagcgctaccacccggactcggtc
tacaagcaggcgctcgaccaggtcagcgtgccccggccgagcacccggcggatcggcggc
gagccgctgcgcgaccaggcgctgctggagtggtgcgggcagctcctggccgacgtcctc
ggcaagcccgaggagctggccggtgttgccagccccgcagtggcgagcggacgatga
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