Mesocricetus auratus (golden hamster): 101841082
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Entry
101841082 CDS
T08306
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
maua
Mesocricetus auratus (golden hamster)
Pathway
maua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
maua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101841082 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maua03021
]
101841082 (Pcf11)
03019 Messenger RNA biogenesis [BR:
maua03019
]
101841082 (Pcf11)
Transcription machinery [BR:
maua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101841082 (Pcf11)
Messenger RNA biogenesis [BR:
maua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101841082 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
101841082
NCBI-ProteinID:
XP_005073992
EnsemblRapid:
ENSMAUG00000021407
UniProt:
A0A1U7QVI8
LinkDB
All DBs
Position
Unknown
AA seq
1554 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETANLGPGSAPSKLHVSQIPAMAVKTPHQVPVQPDKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKEQGHRKEFVMNTLNQSDMKTSKTVPSEKLNSSKQEKSKSSERITKKELDQ
LDSKSKSKSKSPSPLKNKLSHPKDLKNQESESMRLSDMNKRDPRLKKHLQDKAEGKDEDV
KEKRKSTEKKDKDEHMKSSEHRLIGSRSKIINGIVQKQDMVTEELEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLAPKAGKMRQSGLKQSHMEEFPPPSR
EERNVKRSTKQDVRDPRRLKKMDEERPQETSSQHSMKSGAEPKENIENWQSSKSAKRWKS
GWEENKSLQQGDEHSKPPHLRHRESWSSTKGILSPRTPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYED
SDKPFVDGPASRFAGLDTNQRLTALAEDRPLFDGPGRPSVTRDGPGKMIFEGPNKLSPRI
DGPPTPGSLRFDGSPGQMGGGGPMRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ
GGGGGGFRFEGSPSLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFDGPHGQPV
GNLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGP
HSQSVAGLRFEGHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPVPGGGLRIE
GPLGQGGPRFEGCHSLRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQRFDGPPGQQ
VQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTAPYNDPPGNA
FNVPSQGLQFQRHEQIFDTPQGPNFNGPHGPGNQNFPNPLNRASGHYFDEKNLQSSQFGN
FGNLPTPMSVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFIQNPSGGLPKAYPD
NHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEAVAQPPPEEEEDQNEDQDVPDLTNF
TIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTH
RRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVE
SCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVEN
PLNIMLNIVKNELQEPCESPKVKEEQIDAPPACSEESVATPTEIKTENDTVESV
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggggctgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcgctggaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccttggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctgccccctaatgtgaatacatctagcatccat
gtgaatcccaaatttttaaataaatcgcctgaggagccttcaacacctggcacagtggtc
agttcccccagtatctcaactcctccgattgtacctgatatacaaaagaatcttacccaa
gaacaactaataaggcagcagttacttgcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagttagaacaagctaaggcacaactggcagtatctcttagtgtt
cagcaggagacagccaacttgggtcctggatcagcaccatctaaattacatgtttcacaa
attcctgctatggcggttaaaactccccatcaggttcctgtgcaacctgacaaaagccga
ccgggtccatctttacaaatccaggacttgaaaggaactaatcgagatccccgtcttaac
aggatgagccaacattcttctcatggcaaagagcagggtcacaggaaggaatttgtaatg
aacacgttaaaccagtctgatatgaaaacaagtaaaactgtaccctctgaaaaactaaat
tcatccaagcaagaaaaaagtaaatcaagtgaaagaataaccaagaaagaacttgaccag
ttagattctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacccaaaagacttgaaaaatcaagaatcggaaagtatgaggttgtctgatatgaacaaa
agagatccacgattaaaaaagcatctgcaggataaagctgaaggcaaagatgaagatgta
aaagaaaagagaaaaagtacagaaaagaaggataaagatgagcacatgaaatcatctgaa
cacagactgattggaagtagaagtaaaatcataaatggcattgtccaaaaacaggacatg
gttacagaagaattggaaaaacagggaacaaaaccagggagatcaagtactcgaaagaga
tcaagatcgaggtcaccaaagtctcgatcaccaattatacattccccaaagagaagagat
agacggtcacccaaacgaaggcaaagaagtatgtctccaactttggcccccaaagctgga
aagatgcgtcagtcaggacttaaacagtcacacatggaagagttcccaccaccttccagg
gaagaaagaaatgttaagagaagtactaaacaggatgttcgagatcccagacgactgaag
aagatggatgaggaacggccacaagaaacttcaagtcagcattctatgaagtcaggtgct
gaaccaaaggagaatatagagaattggcaaagctccaagtctgctaaaagatggaaatct
ggttgggaagaaaataaaagcttgcaacagggtgatgaacatagtaaacctcctcatcta
aggcatagggaaagctggtcaagcactaaaggaatattgtcacctcggaccccaaagcag
caacatcgattaagtgtagatgccaatcttcagattcctaaagagttaacccttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcttctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtgtacga
gaggagcagagatctccattcaatgatcgttttccacttaagcgacctagatatgaagat
tcagataaaccatttgtagatggcccagcctcaagatttgctggccttgatacaaatcag
cggcttacagctttagctgaagatcgaccattatttgatggacctggtaggccatctgtg
acgagagatggcccaggcaagatgatttttgaaggacctaataaattaagccctagaatt
gatggacctcctacaccaggttctcttcggtttgatgggtcaccaggacaaatgggggga
ggaggccctatgagatttgaaggaccacaaggtcagttaggaggtgggtgccctttgaga
tttgaaggtcctccaggaccagtaggaacacctctcaggtttgaagggccaattggtcaa
ggaggaggaggaggtggttttcgatttgaaggttcacctagtctgaggtttgagggatct
gcaggtggtttgcgatttgaaggaccagggggtcagcctgtgggtggtctcaggtttgaa
ggacatcgtggtcaacctgtgggtggtctgaggtttgatggacctcatggacagcctgtg
ggcaatcttagatttgataaccctcgaggtcagcctgtaggtggacttagatttgagggg
ggtcatggtccatcaggggctgcaattaggtttgatggacctcatggtcagccaggtggt
ggtatcagatttgagggccctttgctacagcaaggagtgggaatgaggtttgagggtccc
cacagtcagtctgtagctggactgagatttgaaggacataatcaactaggtgggaacctt
aggtttgagggaccacatggtcaaccaggggttgggatcaggtttgaaggacctttagtt
caacaaggaggtggaatgaggtttgagggtcctgtgccaggaggtggcctgagaattgaa
gggcctctgggtcaaggtggtcctagatttgaaggttgtcattctttaaggtttgatgga
cagccaggtcaaccatcactcttgccaagatttgatggattacatggccagccaggtcct
agatttgaaagaactggtcagccaggtccacagagatttgatgggccacctggacagcag
gttcaaccgaggtttgatggtgtacctcaaagatttgatgggccacaacaccagcaagca
tcaagatttgatattcctcttggtctgcaaggcacccgatttgacaatcatccttcacaa
aggcttgaatcggtatctttcaatcagactgccccatataatgatccacctggcaatgct
tttaatgttccatctcaaggactacagttccagagacatgaacaaatatttgatacccct
caaggaccaaattttaatggacctcatggccctggaaaccagaatttcccaaatcctctt
aacagagcttcaggacactattttgatgaaaagaatcttcagagttctcagtttggaaat
tttggcaatttacctactccaatgtcagtaggaaatattcaggcgtctcaacaggttctg
actggtgttgcgcagccagtagcgtttggccaaggacaacagtttttaccagttcatcca
cagaatcctggagcttttattcaaaatccctcaggaggtcttcctaaggcatatcctgat
aatcatctcagtcaggtggatgtaaatgaattgttttcaaaactactaaaaacaggaatt
ctcaaattgtcacagcctgattcagctacaacacaggtaaatgaggctgttgctcagcct
ccccctgaagaagaggaggatcagaatgaagatcaagatgttccagaccttactaacttt
acaattgaagaattgaaacaacgttatgacagtgttataaaccggctgtacactgggatt
cagtgttactcttgtggaatgaggtttacaacatcccagacagatgtttatgcagatcac
ttggactggcattatcggcaaaatagaactgagaaagatgttagcagaaaagtcactcat
agacgttggtactacagtttaacagactggatagaatttgaagaaatagctgatttggaa
gaacgtgcaaaaagccagttttttgaaaaggttcatgaagaggttgtcctcaaaactcag
gaggctgctaaagaaaaggagttccaaagtgtacctgctggaccagctggagctgttgag
agttgtgaaatctgtcaagaacagtttgaacagtactgggatgaagaggaggaggaatgg
cacttaaaaaatgctattagagtagacggaaagatttaccatccatcgtgttatgaagat
tatcaaaatacatcttctttcgattgtacaccatctcccagcaagacaccagttgaaaac
cctttgaacattatgttgaacattgtcaaaaacgaattgcaagaaccctgtgaaagtccc
aaagttaaggaagagcaaattgatgccccaccagcttgttcggaagaaagtgtagcaaca
cccactgaaattaaaacagaaaatgatacagttgagtcagtttaa
DBGET
integrated database retrieval system
