Microbacterium aurum: BOH66_06900
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Entry
BOH66_06900 CDS
T04977
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
maur
Microbacterium aurum
Pathway
maur03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BOH66_06900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maur03400
]
BOH66_06900
Enzymes [BR:
maur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BOH66_06900
DNA repair and recombination proteins [BR:
maur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BOH66_06900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
TRCF
Helicase_C
ResIII
MFD_D3
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
APZ35784
UniProt:
A0A1P8UCB9
LinkDB
All DBs
Position
1387914..1391582
Genome browser
AA seq
1222 aa
AA seq
DB search
MRALLQDDGEASGVRTAVEAALVDTDFSMVTGLDAPMLAALLERRRASGAPAALLAIAPT
GRRAEGLGAALQSLVPDAQVLHFPAWETLPHERLSPSTETVGRRLAVLRAAAAWEAAGGT
TPLIITASVRGALQPLAAGLTDAGVVELAVGARGAGLDTVVRRLVDLAYHRVDMVSRRGE
FAVRGGILDVFPPVADHPYRVEFFGDEVDQIRAFSVADQRSLPGEVTAVTLLPSRELLLT
PPVRARAAALQDRFPGLRTMLEKMSEGIPVEGMESLLPAVADAVVPLVDYLPRGTAASLV
DPERAVGRAMTLGETNREFLEAAWSAAVAGADTPVDLGAGDFLTLPELQAATAERGGVWW
TFSGFDSGAAAAEADLRQAADAGASPQVPDAAAGVVRVAANPVPSFQGNVEGATAHVGDL
VAGGWRVVIAASGTGLVDRARDVLAERGIAARSAHDLDDVPEPGVAVAVLATLEGGFELP
DAKLAVLTEAEFYGRTIGADGRVVKKLASRRKNVVDPLQLKTGDIVVHSTHGIGRFIELV
QREVSSGGRNAVKTTREYLVLEYAPSKRGHPGDKLYVPTDQLDLLSRYVGGDAPTLSKMG
GSDWAAAKGKARKAVRDIAVELVKLYSARMAAKGYAFGPDTPWQRELEEAFPFAETPDQL
QTIDEIKADMERPIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHF
DTFTERFAGFPVKVRPLSRFQTDKEARDTLAGLTDGTVDMVIGTHRILTEKVIFKDLGLM
IIDEEQRFGVEHKDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPI
LSYVGPRSDKQIAAAIRRELLREGQVFYVHNRVQSIQRVAADLAGLVPEARIAVAHGQMG
EHALEEVVDGFWERRFDVLVSTTIVETGLDIANANTIIIDRADKYGLSQLHQLRGRVGRG
RERAYAYFLYDEMKPLSETAADRLETIAVNNDLGSGMQVALKDLEIRGAGNLLGAEQAGH
IAGVGFDLYLRMIGEAVATFRGDEVEGPAELRLELPVDARLPESYIDSERLRLEAYQKLS
AAASPNARTSGGGQTGADAAASADAIDLVVDELTDRYGTPPREVEGLVAVARLRRRAAQA
GLTDVVAMGPNLRVAPAPASDSLRVRLQRLYPKSKVLAGGEAMVVPLPTAGGERVADGDL
IAWVGQLIDQLYPLPVADAVEA
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcgccctcttgcaggacgacggcgaggcgagcggggtccgcaccgccgtcgaggcc
gccctcgtcgacaccgacttctcgatggtcaccggcctcgacgcgccgatgctggccgcg
ctcctcgagcgccgccgggcgagcggcgctccggcggcgctgctggcgatcgcccccacc
ggccgccgcgccgaagggctcggtgcggcgctgcagagtctcgtgcccgacgcgcaggtg
ctgcatttccccgcgtgggagacgctgccgcatgagcggctgagcccgtcgaccgagacc
gtcggccggcggctggccgtcctgcgcgccgccgcggcctgggaggcggcgggcggcacg
acgccgctgatcatcacggcatccgtccggggcgcgctgcagccacttgccgcgggtctc
accgacgcgggcgtggtcgagctcgccgtgggcgcgcgcggcgccggactggacaccgtc
gtgcgtcgtctcgtcgacctcgcctaccatcgcgtcgacatggtgtcccgccgcggcgag
ttcgcggtgcgcggcggcatcctcgatgtcttccccccggtggccgaccacccgtatcgc
gtcgagttcttcggcgacgaggtggaccagatccgcgcgttctcggtcgccgaccagcgt
tcgctgcccggagaggtcaccgccgtcaccctgctgcccagccgcgaactgctgctgacg
ccgccggtgcgcgctcgcgcggcggccctgcaggaccggttcccggggctgcgcaccatg
ctcgagaagatgagcgagggcatccccgtcgagggcatggaatcgctcctgccggcggtc
gccgacgccgtcgtcccgctcgtggactacctgcctcgcggcaccgcggcatccctcgtc
gaccccgaacgcgccgtcgggcgcgccatgacgctgggcgagacgaaccgggagttcctc
gaggcggcgtggagcgccgccgtcgccggcgccgacaccccggtcgacctcggcgcgggc
gacttcctcaccctccccgaactgcaggccgcgaccgccgagcggggcggcgtgtggtgg
accttcagcggcttcgactccggcgccgcggcggcggaggcggacctgcgacaggcggcg
gacgcgggtgcctccccccaggtcccggatgccgcggccggggtcgtgcgcgtcgccgcg
aacccggtgccgtccttccagggcaacgtggagggggcgaccgcgcacgtcggcgacctg
gtggcgggcggctggcgggtcgtgatcgcggcatccggcaccggcctcgtcgaccgcgcc
cgcgacgtcctcgccgaacgcggcatcgccgcgcgctccgcccacgacctcgacgacgtg
cccgaaccgggcgtcgccgtcgcggtcctcgcgaccctcgagggcggtttcgagctgccc
gacgcgaagctcgcggtgctcaccgaggcggagttctacggtcgcacgatcggcgccgac
gggcgtgtggtgaagaagctcgcctcccggcgcaagaacgtcgtcgacccgttgcagctg
aagacgggtgacatcgtcgtgcactccacgcacggcatcggccggttcatcgagctggtg
cagcgcgaggtgtccagcggcggtcgcaacgccgtcaagacgacgcgcgagtacctcgtg
ctcgaatacgccccgtccaagcggggtcaccccggcgacaagctgtacgtcccgaccgac
cagctcgacctcttgagcaggtacgtcggcggcgacgcgcccacactgtcgaagatgggc
ggcagcgactgggccgccgcgaagggcaaggcgcgcaaggcggtgcgcgacatcgccgtc
gagctcgtcaagctgtactcggcgcgcatggccgcgaaggggtacgcgttcggccccgac
acgccgtggcagcgcgagctcgaggaggcgttcccgttcgccgagacgcccgaccagctg
cagacgatcgacgagatcaaggccgacatggagcggcccatcccgatggaccggctgctc
tcgggcgatgtcggcttcggcaagaccgaggtcgccgtgcgcgccgcgttcaaggcgatc
caggacggcaagcaggtcgcgatgctcgtgccgaccaccctgctcgtcaagcagcacttc
gacaccttcaccgagcggttcgcgggcttccccgtcaaggtgcggccgctctcgcgcttc
cagaccgacaaagaggcccgcgacaccctcgcaggcctcaccgacgggaccgtcgacatg
gtcatcggcacgcaccgcatcctcaccgagaaggtgatcttcaaggacctcggtctcatg
atcatcgacgaggagcagcgcttcggtgtcgagcacaaggacgcgctgaagaagctgaag
accaacgtcgacatcctcgccatgagcgcgacgccgatcccgcgcaccctcgagatggcg
gtcaccggcatccgggagatgtcgaccctcgcgacgccccccgaggaccggcatccgatc
ctcagctacgtcggcccccgcagcgacaagcagatcgccgccgcgatccgccgtgagctg
ctgcgggaggggcaggtgttctacgtgcacaaccgcgtgcagtcgatccagcgcgtcgcc
gccgacctcgccggactcgtccccgaggcgcgcatcgccgttgcgcacgggcagatgggg
gagcacgcgctggaggaggtcgtcgacggcttctgggagcgccggttcgacgtgctcgtc
tcgacgaccatcgtggagaccgggctcgacatcgccaacgccaacacgatcatcatcgac
cgcgccgacaagtacggtctctcgcaactgcaccagctgcgcgggcgcgtcgggcgcggg
cgggaacgcgcgtacgcgtacttcctctatgacgagatgaagccgctgtccgagaccgcc
gcagaccgcctcgagacgatcgccgtcaacaacgacctgggttcgggcatgcaggtggcg
ctgaaggacctcgagatccgcggcgcgggcaatctcctcggcgccgagcaggccggtcac
atcgccggtgtcgggttcgacctgtacctgcggatgatcggcgaggctgtcgcgaccttc
cgcggcgacgaggtggagggtcccgccgagctccggctcgagctgcccgtcgatgcccgg
ctgccggagagctacatcgacagcgagcggctgcgcctggaggcgtatcagaagctctcc
gcggccgcatcgccgaacgcgcgcacgagcgggggagggcagacgggggcggatgccgcg
gccagcgccgacgcgatcgatctcgtcgtggacgaactcaccgaccggtacggcacgccg
ccgcgcgaggtggaggggctcgtcgccgtcgcgcggctgcggcgtcgcgccgcgcaggcc
gggctcaccgacgtcgtcgccatggggccgaacctgcgggtggcgccggccccggcatcc
gattcgctgcgcgtgcggctgcagcggctgtacccgaagtcgaaggtgctcgccggcggc
gaggccatggtcgtgccgctgccgacggccggcggggagcgcgtcgccgacggcgacctc
atcgcctgggtgggtcagctcatcgaccagctgtatccactgcccgtggccgacgccgtc
gaggcctga
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