Mycolicibacterium aurum: NCTC10437_04631
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Entry
NCTC10437_04631 CDS
T06794
Name
(GenBank) DNA ligase D/DNA polymerase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mauu
Mycolicibacterium aurum
Pathway
mauu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mauu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NCTC10437_04631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mauu03400
]
NCTC10437_04631
Enzymes [BR:
mauu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NCTC10437_04631
DNA repair and recombination proteins [BR:
mauu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NCTC10437_04631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Thr_synth_N
Motif
Other DBs
NCBI-ProteinID:
VEG57618
UniProt:
A0A3S4TEV2
LinkDB
All DBs
Position
1:complement(4892429..4894696)
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AA seq
755 aa
AA seq
DB search
MVDRYDRVKLTNPDKVLYPATGTTKGQVFDYYINVAPAMLPHIAGRAVTRKRWPNGVDEG
SFFEKQLASSAPEWMSRGTIVHKSGTTTYPIIDTAEGLAWIAQQAALEVHVPQWRFDEAG
AVGPATRIVFDLDPGEGVTMRQLCQVAHEVRDLVTDIGLQMFPLTSGSKGLHLYVPLEDP
ISSRGASVLAKRVAQQLEQTMPKQVTATMTKSLRDGKVFLDWSQNNGNKTTIAPYSLRGR
EHPTVAAPRTWEEIEDPKLRHLTYDEVLDRLERDGDLLADLDPALPVPDRLTTYRGMRDR
TKTPEPVPADVPTTGNNDKFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPETPSVNHL
AVHTEDHPMEYLTFAGEIPKGEYGGGDVYVWDTGTYETEKFRDNPPDGPAKGGEVIVTLH
GEKVEGRYALIQTDGKNWLAHRMKEQQKPTAADLAPMLATEGSVQRLTQGPWVFEGKWDG
YRMLVDADRGKLTLRSRRGRDVTAEYPQLKALAADLADHHVILDGEAVALDESGVPSFGE
MQNRARSTRVEFWAFDILYLDGRSLLRAKYSDRRRLLEALAEGGGLIVPAQIDGDGPEAL
EFARERGWEGVVAKKRDSTYQPGRRSASWIKDKIWKTQEVVIGGWRAGEGGRTSGVGALM
LGIPADGGLQFVGRVGTGFTEKALASLKKTLEPLHTDESPFVTTLPKQDAKGVTFVRPVL
VGEVRYSERTSDGRLRQASWRGLRTDKVAEEVVWE
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
gtggtggaccgctatgaccgggtgaaactgaccaacccggacaaagtgctgtatccggca
accgggaccacaaaagggcaggtgttcgactactacatcaacgtcgccccggcgatgctg
ccgcacatcgccggccgcgccgtgacgcgcaagcggtggcccaacggcgtggacgagggg
tccttcttcgagaagcagctggcatcgtcggcgccggagtggatgagtcgcggcaccatc
gtgcacaagtccggtaccacgacctacccgatcatcgacaccgccgaggggctggcgtgg
atcgcgcaacaggctgcactggaagtgcacgtgccgcagtggaggttcgacgaggcaggt
gccgtcggcccggccacccggatcgtcttcgacctcgaccccggcgaaggggtgaccatg
cgccagctctgccaggtggcccatgaagtgcgtgacctggtcaccgacatcggcctgcag
atgttcccgctgaccagcggcagcaagggcctgcacctgtatgtgcccctggaggacccg
atcagctcgcgtggcgcgtcggtgctcgccaagcgggtcgcgcagcagctggagcagacc
atgcccaagcaggtgacagcgaccatgaccaagagcctgcgcgacggcaaggtgttcctg
gactggagccagaacaacggcaacaagaccacgatcgcgccgtattcgcttcgggggcgc
gagcatccgacggtggccgcgccacgcacatgggaggagatcgaggacccgaagttgcgg
cacctgacctacgacgaggtcttggaccggcttgagcgtgacggcgacctgctcgccgac
ctcgacccggcgctgcccgtgcccgaccgactgacgacataccggggtatgcgtgatcgg
accaagacgccggagccggtacccgccgacgtgcccacgacggggaacaacgacaagttc
gtgatccaggaacatcacgcgcgccggctgcactacgacttccggctggagcgcgacggc
gtactggtcagctgggcggtgccgaagaacctgccggagacaccgtcggtgaatcatctg
gccgtgcacaccgaggaccacccgatggaatacctgacgttcgccggggaaatcccgaag
ggcgaatacggcggcggtgacgtctacgtgtgggacaccgggacctatgagaccgagaag
ttccgcgacaaccccccggacgggccggccaagggcggcgaggtgatcgtcacgctgcac
ggagagaaggtcgaaggccgttacgcgctgatccagaccgacggcaagaactggctggcc
caccggatgaaagagcagcagaagccgacggccgcggatctggcgccgatgctggccacc
gaagggtcggtgcagcgactgacccaggggccgtgggtgttcgagggaaagtgggacggg
taccggatgttggtcgacgccgaccggggcaagctgacgttgcggtcccgccggggccgt
gacgtcaccgcagagtatccgcagttgaaggcgctcgccgccgacctcgccgatcatcat
gtgatcctcgacggtgaggcggtggcgctggacgagtccggggtgccgagcttcggcgag
atgcagaaccgtgcccgttcgacgcgggtggagttctgggccttcgacattctctacctc
gacggccgatcgctgttgcgggccaagtactccgaccgcagacgcctgctcgaggctctg
gccgagggtggcgggctgatcgtccctgcgcagatagacggtgacggccccgaggcgctg
gagttcgcgcgggagcgtgggtgggagggcgttgtcgcgaagaagcgcgactccacctat
caaccaggtcggcgttccgcttcgtggatcaaggacaagatctggaagacccaggaggtg
gtgatcggaggctggcgggcgggcgaaggcgggcgcaccagcggcgtcggtgcgctcatg
ctcgggatcccggccgacggcggcctgcagttcgtggggcgcgtcggcaccggcttcacc
gaaaaggctctcgcatcgctgaagaagaccttggaacccctgcataccgatgaatcaccc
tttgtgacaacgcttcccaagcaagacgcgaaaggggtgactttcgtgcggccagtgttg
gtgggtgaggtgcgctacagcgaacgaacgtccgacggcaggttgcgccaagcgagctgg
cgtgggctacggacggacaaggtcgctgaagaggtggtctgggaatag
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