Mycobacterium avium subsp. paratuberculosis E93: RE97_14275
Help
Entry
RE97_14275 CDS
T03847
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mavu
Mycobacterium avium subsp. paratuberculosis E93
Pathway
mavu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mavu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RE97_14275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mavu03400
]
RE97_14275
Enzymes [BR:
mavu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RE97_14275
DNA repair and recombination proteins [BR:
mavu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RE97_14275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJK80228
UniProt:
A0A7U4XZB2
LinkDB
All DBs
Position
complement(3150576..3154253)
Genome browser
AA seq
1225 aa
AA seq
DB search
MEFIMTAPGAARPETPIAGLVELALTAPTFQQLIDTAAASPADLSLVGPASTRLFVASAL
ARLGPLLVVTATGREADDLTAELRGVVGDAVAVFPSWETLPHERLSPGVDTVGARLTVLR
RLAHPDDARLGPPLQVVVTAVRSLLQPMTPQLGLVEPVTLSVGQEIEFEHVIARLVELAY
SRVDMVGRRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIAVDT
VISVPCRELLLTEDVRARAAELAAQHPASEPAITGSVSDMLAKIADGIAVDGMEALLPVL
RPGKQVLLTDQLADRTPVLLCDPEKIRTRAADLIKTGREFLEASWSVAALGTLENQAPID
VEQLGGSGFAELDEVRAAAVRGGHPWWTLSQLSDESAVELDVRAAPSARGHQHDIDGIFA
MLRAHVSTGGHAAVVAPGTGTAHRVVERLAECDTPAAMLESGAAPRAGVVGVLKGPLHDG
IVIPGANLVVITETDLTGSRVAAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVE
MTERTVGGARREYLVLEYASSKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWA
NTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAEMEDAFGYTETVDQLTAITE
VKSDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTD
RMAGFPVTVKGLSRFTDAAESRAVIEGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEE
QRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVG
PHDDKQVAAALRRELLRDGQAFYVHNRVSSIDRAAARVRELVPEARVVVVVAHGQMPEER
LERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER
GYAYFLYPPHAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAG
VGFDLYVRLVGEAVEAYRAAADGQTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEAY
RRLAAAGSDDEIDAVVEELVDRYGALPEPALRLVAVARLRLLCRAAGITEVSAPSAATVR
LSPITLPDSAQVRLKRMYPAASYRATTSTVQVPIPRAGGVGAPRLRDVELVQMVANLVTA
LQGKPQTDVGTGTPVAAMASEEGRG
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggaattcatcatgaccgcaccgggggctgctcgcccagaaaccccgatcgcggggctc
gttgaattggcgctcaccgcgccgaccttccagcagttgatcgacaccgcggccgcatcg
ccggccgacctgagcctggtgggtccagccagcacgcgactgttcgtcgccagtgcgctg
gcgcggttgggccctttgctggtagtcaccgcgaccgggcgcgaagccgacgacctgacc
gctgaactgcgcggcgtcgtcggcgatgccgtggccgtcttcccgtcctgggagacgctg
ccgcacgagcggctctcgcccggcgtcgacaccgtcggcgcccggttgacggtgctgcgc
cggctggcccaccccgacgacgcgaggctggggccgcccctgcaggtggtggtgaccgcg
gtccgctcgctgctgcagccgatgaccccgcagctgggtctggtggagccggtgacgctg
agcgtgggccaggagatcgaattcgagcacgtgatcgcgcggctggtcgagctggcctac
agcagggtcgacatggtgggccggcgcggcgaattcgccgtgcgcggcggcattctcgac
gtcttcccgccgaccgccgagcacccggtgcgggtcgagttctggggtgacgaggtcagc
gagatgcggatgttctcggtcgccgaccagcgttccatccccgagatcgcggtcgacacc
gtgatctcggtgccctgccgcgagctgctgctcaccgaggacgtgcgggcccgcgccgcg
gagctggccgcccagcacccggcgagcgagccggccatcaccggcagcgtcagcgacatg
ctggccaagatcgccgacggcatcgcggtcgacggcatggaggcgctgctgccggtgctg
cggcccggcaagcaggtgctgctgaccgatcagctggccgatcgcaccccggtgctgctg
tgcgacccggagaagatccgcacccgggcggccgacctgatcaagaccggccgcgagttc
ctggaggcctcctggtcggtcgcggcgctggggaccttggagaatcaagcgccgatcgac
gtcgagcaactgggcggatcgggcttcgccgagctggacgaggtgcgggcggcggcggtc
cggggcgggcacccgtggtggacgctgagccagctgtccgacgagtcggcggtggagctg
gacgtgcgggcggcgccgtcggcgcgcggccatcaacacgacatcgacggcatcttcgcg
atgctgcgcgcgcacgtcagcaccggcggccacgccgccgtcgtcgcgcccggcaccggg
accgcgcaccgggtggtggaacggctggccgaatgcgacaccccggccgccatgctggaa
tccggcgcggcgccccgcgccggggtggtcggggtgctcaagggaccgctgcacgacggc
atcgttatccccggcgcgaacctggtggtgatcaccgagacggacttgaccggcagccgg
gtcgccgccgtggagggcaagcggctggcggccaagcggcgcaacaccgtcgacccgctg
gcgctgacggccggcgacctggtggtgcacgaccagcacggcatcggccggttcgtggag
atgaccgagcgcacggtcggcggggcgcggcgcgagtacctggtgctggagtacgcgtcg
tccaagcggggcggcggatccgacaagctttatgtcccgatggattcgctggaccagctg
tcgcgctatgtcggcgggcaggcgccggcgctgtccaaactcggcggcagcgactgggcc
aacaccaagaccaaggcgcgccgcgcggtgcgcgagatcgccggcgaactggtctcgctg
tacgccaagcggcaggccagccccgggcacgcgttctccccggacaccccgtggcaggcc
gagatggaggacgccttcggctacaccgagaccgtcgaccagctgaccgcgatcaccgag
gtcaagtcggacatggaaaaaccgatcccgatggaccgggtgatctgcggcgacgtcggc
tacggcaagaccgagatcgcggtgcgggcggcgttcaaggcggtgcaggacggcaagcag
gtcgccgtgctggtgcccaccacgctgctggccgaccagcatctgcagaccttcaccgac
cggatggccggcttcccggtgaccgtgaagggcctgtcccggttcaccgacgcggccgaa
tcccgcgcggtgatcgaggggctggccgacggctcggtcgacatcgtgatcggcacgcac
cggctgctgcagaccggggtgcgctggaaggacctcggcctggtggtggtcgacgaggag
cagcggttcggcgtcgaacacaaggagcacatcaagagcctgcgcacccacgtcgacgtg
ctgaccatgagcgccacgccgattcccagaacgctggagatgagcctggccggcatccgc
gagatgtcgaccatcctgaccccgccggaggagcgctacccggtgctgacctacgtcggc
ccgcacgacgacaagcaggtggcggcggcgttgcggcgcgagctgctgcgcgacgggcag
gccttctacgtgcacaaccgggtcagctcgatcgaccgggcggcggcccgggtgcgcgag
ctggtgcccgaggcgcgggtggtggtggtggtggcgcacgggcagatgcccgaggagcgg
ctggaacgcaccgtgcaggggttctggaaccgcgagtacgacatcctggtgtgcaccacg
atcgtggagacagggctggacatctccaacgccaacacgctgatcgtcgagcgcgccgac
acgttcgggctctcgcagctgcaccagctgcgcggccgggtggggcgcagccgcgaacgg
ggttacgcctacttcctgtatccgccgcacgccccgctgaccgagacggcgtatgaccgg
ctggccaccatcgcccagaacaacgagctcggcgcgggcatggcggtcgcgctgaaggac
ctggagatccgcggcgcgggcaacgtgctgggggtggagcagtccgggcacgtcgccggc
gtcggcttcgacttgtatgtgcggctggtgggcgaggccgtcgaggcgtaccgggccgcg
gcggacggccagaccgtcaccaccgccgaggagcccaaggacgtgcggatcgacctgccg
gtggacgcgcacctgccgccggactacatcgccagcgatcggctgcggctggaggcgtat
cggcggctggccgccgcgggctcggacgacgagatcgacgcggtggtcgaggaactcgtc
gaccgctacggggcgctgcccgaaccggccctgcggctggtggcggtcgcccggctgcgg
ctgctgtgccgcgccgccggcatcaccgaggtgtcggcgccgtcggcggccaccgtgcgg
ctgtcgccgatcacgctgcccgattcggcccaggtgcggctgaagcggatgtatccggcc
gccagctaccgggccaccacgtcgaccgtgcaggttcccatcccgcgcgccggcggggtg
ggcgcgccgcggctgcgtgacgtcgagttggtgcagatggtggccaacctggtgacggcg
ctgcagggtaaaccgcagacggatgtcggcaccggcacgccggtggcggcgatggccagt
gaggaggggcgcgggtga
DBGET
integrated database retrieval system
