Aquirhabdus parva: HYN46_06530
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Entry
HYN46_06530 CDS
T05575
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mbah
Aquirhabdus parva
Pathway
mbah03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mbah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HYN46_06530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbah03400
]
HYN46_06530
Enzymes [BR:
mbah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYN46_06530
DNA repair and recombination proteins [BR:
mbah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HYN46_06530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
ArfA
Motif
Other DBs
NCBI-ProteinID:
AXI02512
UniProt:
A0A345P5F3
LinkDB
All DBs
Position
1455527..1458988
Genome browser
AA seq
1153 aa
AA seq
DB search
MTLAVLSDLNQITETLIQIPAGERRWLGNLTGALPSLVLAELVQRTTSLVVMVAKDSAQV
SLIDEELRFFGVTPYIFPDWETLPYDRLSVHQSIISERLSLLSNMPQQGVVLVAATTLAQ
RIAPPKWLLGQHFDIRKGQKLNFESQRQRLSRAGYRAVETVFEPGEYALRGSLMDIFPMG
QTQPIRIELFDDEVESLRLFDAETQRTTTHIENFRLLPAQEFPLIDGRGMFRERFGDLFP
DASPKRIPFYQDVLNGVSAQGLEYYQPLFFARDEFIEGGTLFDYLPESSLIVSDQEVDQV
LDHFWVDINQRYEDRRHNAELPILPPNELFLTVNELFGRLKAFGRLVLSEQPFSPRQGTY
NVEAHVPPLLPIDHKSQYPLQALSSFVGTFKGRVLIIAESAGRRETLKELISPALGKMPV
VESLDEFLNGKMPIALGTAALERGLLLDNQLAVIVENQLFGQRVIQRRRRKVSEVSEEFL
VKSLSELSIGAPVVHIDHGVGRYGGLVALEIDNQTHEFVQLDYADNAKVYVPVANLQLIS
RYSGGDPDHAPLHKLGTDTWNKAKRKALEKIHDVAAELLNIQARRQAREGHAFVVDEHAY
DIFCSQFSFEETPDQANAITATLHDMAQSKPMDRLVCGDVGFGKTEVAMRAAFVAVHGGK
QVAVLVPTTLLAQQHYENFVDRFVDWPVRIEVLSRFGSKKDHNKILADLAAGQVDIIIGT
HKLIQEGVEFHDLGLMIVDEEHRFGVRDKEKIKAIRADVDMLTLTATPIPRTLNMAFSGI
RDLSIIATPPARRLAVKTFVLEKTSAALKEAILRELLRGGQVYFLHNDVDSIERAATELR
TLIPEARVAVAHGQMRERELEQVMQAFYHKQANILVCSTIIETGIDVPNANTIIIERADK
LGLAQLHQLRGRVGRSHHQAYAYLMVPSVKNLKGDAEKRLDAIQRASTLGAGFILATEDL
EIRGAGELLGEEQSGNMQAIGFSLYMDMLERATKAIQNGKAPNLDAPLSLTSDINLNLPA
LIPDQYLGDVHQRLLFYKRISHVSDSESLNEIRVEMMDRFGMLPNQAQNLFHVHRLRIQA
EKLGIEKMDFNAKGGIIEFSTETPVEAMTIIKIIQAKPKFFKMEGGRRLRVTANLIDEKE
RLNFAKELLEQMG
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgacgcttgcggtattgtctgaccttaatcaaatcacagaaacacttattcaaattccc
gctggtgaacgtcgctggctaggtaatttgacgggtgctttaccgtcactggttcttgct
gaactggttcagcggactacgagtctggttgtgatggttgcaaaagacagtgctcaagtc
agtctgattgatgaagagttacgtttttttggcgtgacaccatatattttccctgactgg
gaaacactaccttatgatcgtctttcagttcatcaaagtattatttctgagcgtttatct
ttgctgtcgaatatgcctcagcaaggtgtggttttagttgcagccacaactctggctcaa
cgtattgcaccgccaaaatggttattgggtcagcactttgatattcgtaaaggtcagaag
cttaattttgaaagtcagcgtcagcgattaagccgtgcagggtatcgcgcggttgaaacc
gtctttgaacccggagaatatgcacttcgtggtagcctcatggatattttcccgatgggg
cagactcaacccattcgcatcgagctttttgatgatgaagtggagtcgctgcggttattt
gatgctgagacacaacgtacaacgacacatattgaaaattttagacttttacccgcacaa
gagtttccgctgattgatgggcgcggtatgtttcgtgagcgttttggagacttattccct
gatgcgagtccgaagcgtattcccttttatcaggatgttttaaatggagtatctgcccaa
ggactggagtattaccagcccctattctttgcacgtgacgagtttattgaaggcgggact
ttatttgattaccttccggaatcttcgctgattgtttctgatcaagaagttgatcaagta
ttagatcatttctgggtggatattaatcaacgctatgaagatcgtcgccacaatgccgag
cttccgatattaccccccaatgaattatttttaacggtcaatgaactatttggccggctt
aaagcatttggccgactggtgctatccgagcagccatttagcccacgtcagggcacgtat
aatgtcgaagcgcatgttcccccgttattaccaattgatcataagagtcagtatccatta
caagccttgtcgagctttgtcgggacttttaaggggcgagtattaatcattgccgaaagt
gcaggccgacgtgagacgctcaaagagctgattagcccagcgctggggaaaatgcccgtt
gttgagagcttggacgagttcttaaatggcaaaatgcctattgcgcttggcacggcagcc
cttgaacgcggattgttgctcgataatcagcttgctgttattgttgaaaatcaactattt
ggtcaacgggtcattcagcgccgtcgtcgtaaggtctccgaagtctccgaagaatttctg
gtaaaaagtttatcagaattgtctattggtgcgcctgtagttcatatcgatcatggagtt
ggacgttacggtgggttggttgccctagaaatcgataatcaaacgcatgagtttgtgcaa
cttgattatgcggataatgctaaggtttatgttcccgttgccaacttgcaactgattagc
cgttatagcggtggtgatcccgatcatgcgccactgcacaaactaggcacggatacttgg
aataaagccaagcgtaaggcattagaaaaaatccacgatgttgctgccgaattgctcaat
attcaagcgcgtcggcaagcgcgagaggggcatgcctttgtggttgatgagcatgcctac
gacatcttttgtagccaattttcgtttgaagaaaccccagatcaggccaatgcgatcacg
gcaacgctgcatgacatggcacaatcaaaacctatggatcgtttggtgtgcggggatgtt
ggatttggtaaaactgaagtcgctatgcgtgcggcatttgttgcagttcatggtggaaaa
caagtcgctgtattggttccaacgactttgcttgcacaacagcactatgagaacttcgta
gatcgttttgtcgattggccagtgcgcatcgaagttttatcgcgttttggcagtaagaaa
gaccataataagatcctagcagatcttgcggccggtcaggtggatatcattattggcacc
cataagctgattcaagagggggtagaattccacgatctaggactcatgattgttgatgaa
gaacatcgttttggggtccgggataaagaaaaaattaaagcaattcgcgctgatgtggat
atgctgacattgacggctacaccgatcccgcgaacgttaaatatggctttttcaggcatc
cgtgatctgtctattattgcgacgccacctgcgcgtcgtctcgcggttaaaacttttgtg
ctagagaaaaccagcgcagcgctgaaagaagcaattttgcgtgagctactccgtggtgga
caagtttatttcttgcacaatgatgttgatagtatcgagcgcgcggcaacagaactacgg
acattgattcctgaagcgcgtgttgccgttgctcatggccaaatgcgtgagcgtgaactt
gagcaggttatgcaagcgttctatcacaagcaagccaatatcttggtctgctcaacgatt
attgagaccgggattgatgtccctaatgccaataccatcattattgaacgcgcagataaa
ttgggcttagcacaattgcatcaattacgtggacgtgtaggtcgatctcatcatcaagct
tatgcttaccttatggtgccttcggttaaaaatctgaaaggggatgctgaaaagcgcctt
gatgcaattcagcgtgcatcgacgcttggtgcgggattcattttagcgactgaggacttg
gaaattcgtggggcaggagagcttctcggcgaagagcaaagcggcaatatgcaagccatc
ggttttagtttgtatatggatatgctcgaacgtgcaacgaaagccattcaaaatggtaaa
gccccaaatctcgatgcaccgttatcgttgaccagtgatattaatttaaatttaccggct
ttaattccagatcaatacttaggcgatgtgcatcagcgactattattttataagcgtatc
agtcatgtttctgattccgaatcactcaatgaaattcgcgtcgaaatgatggaccggttt
ggcatgttaccaaatcaggcacaaaatttatttcatgtccatcgcttaaggattcaggca
gaaaagctgggtattgagaaaatggattttaatgcgaaaggcggcattattgagttctca
acggaaacacctgttgaggcgatgaccatcattaaaattattcaagctaaaccgaaattt
tttaagatggaaggtggtcgccgtttgcgcgtgacagcgaatcttatcgatgaaaaagaa
cgtttaaactttgcaaaagagctccttgagcaaatgggttaa
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