Mycobacterium basiliense: MB901379_03915
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Entry
MB901379_03915 CDS
T07125
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mbai
Mycobacterium basiliense
Pathway
mbai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mbai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MB901379_03915 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbai03400
]
MB901379_03915 (mfd)
Enzymes [BR:
mbai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MB901379_03915 (mfd)
DNA repair and recombination proteins [BR:
mbai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MB901379_03915 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
VDM90318
UniProt:
A0A3S4FTC5
LinkDB
All DBs
Position
I:complement(4488519..4492199)
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AA seq
1226 aa
AA seq
DB search
MTAPGAASPDTPIAGLVELALTAPTFQQLIARASDRPEELTLVGPASARVFVASALAQQG
PLLVVTATGREADDLTAELHGVFGAAVAVFPSWETLPHERLSPGVDTVGARLMVLRRLAH
PDDAQLGPPLRVVVTAVRSLLQPMTPQLGRQDPVTLSVGQEIGFDDVIARLVELAYTRVD
MVGRRGEFAVRGGILDVFAPTAEHPMRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV
ACRELLLTDDVRARAAELAAQHPATENTVAGSVSDMLVKLAEGIPVDGMEALLPVLRPDD
HALLTDQLAKGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEQLGGS
GFAELNQVRAVASTSGHPWWTLSQLSDESTIELDVRAAPSARGHQRDIDGIFAMLRAHVA
TGGYAVMVAPGAGTAHRMVERLAESDIPAAMVDSGSQRTPKAGVVGVLKGPLLDGIVIPG
VNLVVVTETDLTGSRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERT
VGGARREYLVLEYASGKRGQQADKLFVPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTK
ARRAVREIAGELVSLYAKRQASPGHAYGPDTPWQAEMEDAFGYTETVDQLTAITEVKADM
EKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGF
PVTVKGLSRFTDVAESRAVIDGLADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGV
EHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEDRYPVLTYVGPHDNK
QVAAALRRELLRDGQAFYVHNRVRTIDEAAATVRSLVPEARVVVAHGQMPEELLERTVQG
FWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY
PPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYV
RLVGEAVEAYRAAADGQTVTSPEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAAT
SESEIAAVVEELHDRYGVLPEPARRLVAVARLRLLCRGSGITEVSAPSAATVRLSPLNLL
DSAQVRLKRIYPGANYRATTATVQVPIPRAGGVGAARLRDVELVQMVADLVTALAGKPQQ
DIGITNGISPGDDAGRTASSKERQAR
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccgggggctgctagcccagataccccgatcgcggggctcgtcgaattggcg
cttacggcgcctaccttccagcagctgatcgcgcgcgcctccgatcgacccgaagaattg
acgctggttggcccggccagtgcgcgcgtttttgtcgccagcgcgctggcgcagcagggc
cccttgctggtggtcaccgccaccggccgcgaagccgacgatctgaccgctgaactgcac
ggggtcttcggtgccgcggtggcggtgttcccgtcttgggagaccctgccgcatgagcgg
ctctcgcccggcgtcgacacggtcggcgcccggctgatggtgctgcgccggctggcccat
cccgacgatgcccagctgggtccgccgttgcgggtggtggtgactgcggtgcgttcgctg
ctgcaaccgatgacaccgcaactgggtcgacaggaccccgtcaccttgagcgtcggccag
gagatcggcttcgacgatgtgattgcccgcctggtcgagctcgcctacacccgggtggac
atggtgggccggcgcggcgaattcgcggtccgtggcggcattctcgatgtcttcgccccg
accgccgagcatccgatgcgggtcgaattctggggcgacgagatcaccgaaatgcgcatg
ttctcggtcgccgaccagcggtcgatccccgagattgaggtcagcacgctggtcgcggtg
gcctgccgtgagctactgctcaccgacgacgttcgggcgcgggccgccgagttggccgcc
cagcacccggcgaccgaaaacaccgtcgccggcagcgtcagcgacatgttggtcaagctg
gccgagggcatcccggtggacgggatggaggcgctgctgccggtattgcggcccgacgac
catgcgctgctgaccgatcagctggctaagggcactccggtgttggtgtgtgatccggag
aaagtgcgcaccagggcggccgacctgatcaagaccggccgggagttcttggaagcgtcc
tggtcggttgcggccatggggaccgatgcgcccgtcgacgtcgaacagctgggcgggtcc
ggcttcgcggagctgaaccaggtgcgggcggtggcgagcacgtccggccatccgtggtgg
acgttgagccaactgtccgacgagtcaacgatcgaactggacgtccgggcggcgccctcg
gcgcgtgggcatcagcgtgatatcgacggcatctttgcgatgctgcgcgcacacgttgca
acgggcgggtatgccgtgatggtggcgcccggcgccggcaccgcacaccgcatggtggag
cggctcgccgagtcggacattcccgccgcgatggtggactcgggatcccaacgaactccc
aaggcgggtgtggtcggggtgctcaaaggtccgctactcgacggcattgtcataccgggg
gtgaacctggtcgtggtcaccgagacggatctgaccggtagccgggccaccgccgttgaa
ggcaagcggttggcggccaagcggcgcaacaccgtcgacccgttagcgctgacggccggc
gacctggtggtgcacgatcagcacggcatcggccgattcgtcgagatggtcgagcgcacc
gtcgggggcgcccgtcgcgaatatttggtcctcgagtacgcgtccggcaagcgggggcaa
caggccgacaagctcttcgtgccgatggattccctggatcagttgtcccgctacgtcggc
gggcaggcaccggcgttgagccggctgggcggcagcgactgggccaacaccaagaccaag
gcgcgccgtgcggtgcgtgagatcgccggcgagctggtgtcgttgtacgccaagcggcag
gccagcccggggcacgcctatgggcccgacaccccttggcaggccgagatggaggacgcg
ttcggttacaccgaaaccgtcgatcagctcaccgcgattaccgaggtcaaggccgacatg
gaaaagccgattccgatggatcgggtgatctgtggcgatgtcggctacggcaagacggag
atcgcggtgcgggcggcgttcaaggcggttcaggatggcaaacaggtggcggtgctggtg
cccaccacgctgctggccgatcagcatctgcaaacgttcaccgatcgaatggccgggttc
ccggtcaccgtcaaggggctgtcgcggttcaccgacgtcgcggagtcacgcgcggtgatc
gacgggctggccgacggttcggtggacgttgtgatcggcacacatcgactgctacagacc
ggcgtgcgctggaaggatctgggtttggtggtggttgacgaggagcagcggttcggcgtc
gagcacaaggagcacatcaagtcgctgcgtacccacgttgacgtgctgacgatgagtgcc
actcccatcccgcgcacgctggagatgagtctggccggcattcgcgagatgtcgaccatc
ttgaccccgcccgaggatcgttacccggtgctgacctacgtgggcccgcacgacaacaag
caggtcgctgccgcgttgcggcgggaattgctgcgcgacgggcaggccttttacgtgcat
aaccgggtcaggaccatcgacgaggccgccgcgacggtgcgcagcctggtgcccgaggcc
cgggtggtggtcgcacacgggcaaatgcccgaagagctgctggaacgcacggtacaggga
ttctggaaccgcgaatacgacatcctggtgtgcacgacgatcgtggagaccggtctggac
atctccaacgccaacacactcatcgtcgaacgggccgataccttcggtctatctcaactg
catcagctgcgcggccgggtgggccgtagccgtgagcgcggttacgcctacttcttgtac
ccgccccaagcgccgctgaccgagaccgcctatgaccggttagccactatcgcgcagaac
aacgagctgggcgcgggtatggcggtcgccctgaaggatcttgagatccgcggcgccggc
aatgtgctcggagtcgagcagtccggccacgtcgccggcgtgggattcgacttatacgtg
cggttggtcggcgaggctgttgaggcgtaccgggcggccgccgacggccagacggtgacc
agtccggaggaacccaaggacgtgcggatcgacctgccggtcgatgcgcatctgccgccc
gactacattgccagcgaccgcctgcgtttggagggctaccggcggctggccgccgccacc
tccgagagcgagatcgcggcggtggtcgaggaactgcacgaccggtacggggtgttgccc
gaacccgcccggcggctggttgccgtggcgcggttgcgtctgctgtgccgtggttcgggc
atcaccgaagtgtcggctccgtcggcggccacggtacggctgtcgccgctgaatttgctg
gattcagcgcaggtgcgactcaaacggatctatcccggggcgaattaccgcgccaccacc
gcgacggtgcaggtgcccatcccacgcgctggcggtgtcggtgccgcccgccttcgcgat
gtcgaattggtgcagatggtggccgatctggtgacggcgctagccgggaaaccgcagcag
gatattggtataacgaacgggatatcacccggcgacgatgcgggccgcaccgcgtcgagt
aaggagcggcaagcgcgatga
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