Drepanopeziza brunnea: MBM_05200
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Entry
MBM_05200 CDS
T03105
Name
(RefSeq) nonsense-mediated mRNA decay protein
KO
K14328
regulator of nonsense transcripts 3
Organism
mbe
Drepanopeziza brunnea
Pathway
mbe03013
Nucleocytoplasmic transport
mbe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mbe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
MBM_05200
03015 mRNA surveillance pathway
MBM_05200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbe03019
]
MBM_05200
Messenger RNA biogenesis [BR:
mbe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
MBM_05200
mRNA cycle factors
P-body specific factors
MBM_05200
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
18761135
NCBI-ProteinID:
XP_007293089
UniProt:
K1WUM4
LinkDB
All DBs
Position
Unknown
AA seq
589 aa
AA seq
DB search
MAGNRTQTNGVLAITPAQASGNGARPVPIKPMPVKLKTVVRRLAPGLTEDEFTSVLGEEW
KAGQGKVDWFLYKPGKESKDASKPSKPSRAYFHLTSETHLLSLSDHVRQSNFEDALNTFN
SACLIGPPTVEFAPYGRTPAGRRRVDARAGTIDQDPEFMAFLEQLANPTTGKEANGDSQF
DLGTAKQEKVTMTPLVQALKDKKAIKNKDLAAKAAKKQEANTAKGKPVKESSATEDKKKG
KDVKTDRLVEKAAKEAVKILNRETASKSSTALKSSTGSSASGSSSPKPDSGKAPGRQRQT
VAAAHIRMLQRDLGLSPAQAHRQIRRDTADAQKAERAAAIDKSKENKDSNASPRPQHTQT
APTPPTAPKSTMNQANDRKGRGRGPSDNNSAKSTTANNPPTPMVLLKKPEAQPSPASSSK
TQTVKSAPAAVARRPPQMAAPSDGATQAFVKHANPSQGVTEALLKEAMERFGAVKTVEID
RRKGFAYVDFVDTDGLKKAMAANPITVAQGTVQVMQRKGTALPPEKKPANPAPNAPNAPS
SSRGGGRGSRGGAPGRRGGRAGGRGGGGGGGGGGGASSAPSSAPTGPAK
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaaatcgcactcaaacaaatggagttctggcaatcacaccggcacaagcatct
ggaaatggagctagaccagtgccaattaagccgatgcctgtcaagctgaagactgtagtc
agaaggctggcaccaggcctcacagaggacgaatttacttcagttttgggagaagaatgg
aaagcaggacagggaaaggtagactggtttctctacaagccaggcaaagagtcaaaggac
gcatccaagccatcgaaaccttcacgggcctatttccatctcacgagcgaaacacacctc
ctaagcctctccgatcacgttcgacaatctaacttcgaagatgcgctcaataccttcaac
agtgcttgtcttattgggccgccaactgtcgagtttgcaccttacggccgtacaccagca
ggtagacgccgtgttgatgctcgtgctggtacaatcgaccaagaccctgaattcatggct
ttcctcgagcaattggcaaatccgacaacagggaaggaggccaatggtgattctcagttt
gatcttggaactgcgaagcaagagaaggttaccatgactcccctggtccaggcgctcaag
gacaagaaggcgatcaagaacaaggatctggcggcaaaggcagccaaaaagcaagaggct
aacaccgcaaagggcaaacctgtgaaggagtcgtcggccaccgaagataaaaagaaaggc
aaagatgtcaagacggacagactagttgaaaaggctgccaaggaggctgtcaagattctg
aacagggagaccgcttcaaagtcttctacagcgctgaaatccagcacgggatcgagtgca
tccgggtcatcctctccaaagcctgatagtggtaaagcaccaggtcgacaacgacaaact
gtagcagcagcccatattcgcatgctgcagcgggaccttggtctgagcccagctcaagct
catcgccaaatcagacgagacacggcagatgcgcaaaaggctgaaagagctgcagccata
gataaatccaaggagaacaaggactcgaatgcttctccacgcccgcaacatactcaaacc
gcccccactccccccactgcccccaagtctactatgaatcaagcaaatgaccgaaaagga
cgtggtaggggaccttcagataacaattctgccaaatcaaccacagccaacaatcctccc
actcccatggttttgttgaagaagcctgaagctcagccttctcctgcttccagctcaaaa
actcaaactgtgaagtctgcacctgctgctgtagctcggagacctccgcaaatggccgcc
ccgtcagatggtgctacacaagctttcgtcaagcatgctaacccatctcagggggtcacc
gaagcattgttgaaggaagcaatggagaggtttggagcagtcaagactgtagagattgat
agaaggaaggggttcgcatatgttgactttgttgataccgatggcctgaaaaaggctatg
gcagcaaaccctatcactgtagcccaaggtaccgtccaggtgatgcagcgaaaaggtaca
gctctgcctccggagaagaagcctgccaatccagctccgaacgctccgaatgctccttcg
tcctcaagaggaggcggtcgtggaagtagaggtggggccccggggagacgtggtggccga
gcgggtggaagaggtggtggtggtggtggtggtggtggtggtggtgcatcttcagcacca
tcctcagcacctaccggaccagcgaagtaa
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