Moschus berezovskii (Chinese forest musk deer): 129546606
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Entry
129546606 CDS
T09065
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mbez
Moschus berezovskii (Chinese forest musk deer)
Pathway
mbez03030
DNA replication
mbez03410
Base excision repair
mbez03420
Nucleotide excision repair
mbez03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mbez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129546606 (LIG1)
03410 Base excision repair
129546606 (LIG1)
03420 Nucleotide excision repair
129546606 (LIG1)
03430 Mismatch repair
129546606 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbez03032
]
129546606 (LIG1)
03400 DNA repair and recombination proteins [BR:
mbez03400
]
129546606 (LIG1)
Enzymes [BR:
mbez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129546606 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
129546606 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
129546606 (LIG1)
DNA replication proteins [BR:
mbez03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
129546606 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
129546606 (LIG1)
DNA repair and recombination proteins [BR:
mbez03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
129546606 (LIG1)
NER (nucleotide excision repair)
Other NER factors
129546606 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
129546606 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
DDR
Motif
Other DBs
NCBI-GeneID:
129546606
NCBI-ProteinID:
XP_055267701
LinkDB
All DBs
Position
Unknown
AA seq
960 aa
AA seq
DB search
MERLEPQPERLLATSPVLLCGCRNRKLVTREEEEEGAENSDTIMQRSIMSFFQPKKEGKV
KKPEKETSNNIRETESPPKLALKERNRVVSEGDSPVKRPGRKATRVLGSEGEEEEEEAPT
TPRSQKPASQSPQASPPSPVTLHESSPSRSKPSPAAVSPSGIPKRRTARKQLPKRTFQDV
LKEQGEDEDPETKKKKEEEEAETPAESLPKPEGDNKEEVEGGDHPTMPAEPQKISTESPT
ESVSEPGVTVKQEAQEGSQAQPPPKAPKTLSSFFSPRKPAVKKEAKEEEAGALRKDETKG
HLDPPSYNPAKNNYHPIEDACWKAGQRVPYLAVARAFEKIEEVSARLRMVETLSNLLRSV
VALSPADLLPVLYLSLNRLGPPQQGLELGIGEGILLKAVAQATGRQLESVRAEVAEKGDV
GLVAESSRSTQRLVLPPPALTAAGVFAKFRDIAQLAGSASTTKKMDVIKGLFVACRHSEA
RFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQECPPAMVDAGKGKTAEARKTWLEEQ
GMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCRLSPGVPLKPMLAHPTRGVSEVLKRFE
EAAFTCEYKYDGQRAQIHVLEGGEVKVFSRNQEDNTGRYPDIIGRIPKIKLPSVTSFILD
TEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNGESLVREPLSRRR
QLLRENFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRS
HNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGRYGGFLLASYDEESEEFQAICKLGTG
FSDEELEEHHQRLQALVLPAPRSYVRADGAVAPDHWLDPSDVWEVKCADLSLSPIYPAAR
GLVDSEKGVSLRFPRFIRVREDKKPEQATTSAQVAGLYKKQSQIQNQQGAEPDSEQEEFY
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggagaggcttgaaccgcaacccgaaagactcctggcgaccagtcccgttctactgtgc
ggttgcaggaacaggaaactggtgaccagagaagaggaggaggagggagcagagaattcc
gataccatcatgcagcgaagtatcatgtcatttttccagcccaagaaagagggcaaagtg
aagaagccagagaaggagacatccaacaacatcagagaaacagagtcccctccgaagttg
gcactgaaggagcggaatagagtggtgtccgagggtgactctccagtgaagaggccgggg
aggaaggcaacccgggtcctggggagcgagggcgaggaggaggaggaggaagcccccacc
acccccagaagccagaagcctgcttcacaatctccacaggcctcacctcccagtcctgtc
acactgcatgagagcagcccttcccgctccaagccctctccagcagctgtatccccatca
gggatcccaaagcgtcggacggcccggaagcagcttcccaaacggacatttcaagatgtc
ctgaaagagcagggagaggacgaggacccagaaactaagaagaagaaggaggaagaagaa
gcagagacaccagcagaaagcctcccaaagcctgaaggggacaacaaggaggaagtggaa
ggcggggatcatcccacgatgcccgctgagccccagaagatctccacagagtccccgaca
gaaagcgtttcagagcccggggtgacggtgaagcaggaagcccaggagggcagccaggct
caaccgccccccaaagctccaaagaccctcagcagtttcttctccccccggaagccagct
gtcaaaaaagaagcgaaagaagaagaagctggtgctctgagaaaggacgagaccaaggga
cacctggacccaccgagctacaatcctgccaagaacaactaccaccccattgaagatgcc
tgctggaaggcgggccagagggttccttatctggctgtggcccgggcgtttgagaagatc
gaggaggtctctgctcggctccggatggtggagacgctgagcaacctgctgcgctccgtg
gtggccctgtcacctgctgacctcctgcccgttctctacctgagcctcaaccgcctgggg
ccaccccagcagggcctggagctcggcatcggagagggcatcctcctcaaggcagtggcc
caggccacgggtcggcagctggagtctgtccgggccgaggtggctgagaagggtgacgtg
gggctggtggccgagagcagccgcagcacccagaggctcgtgctgcccccgcccgcactc
actgccgctggcgtctttgccaagttccgggacatcgcacagctggcaggcagcgcttcc
acaaccaagaagatggatgtcatcaaaggcctctttgtggcctgccgtcactcagaggca
cgcttcattgccagagccctgagtggacggctgcgcctcgggctggccgagcagtcggtg
ctggcggccctcgcccaggccgtgagcctcacgccccctggtcaagaatgcccccccgcc
atggtagacgccgggaagggcaagacggcagaagccagaaagacgtggctggaggagcaa
ggcatgatcctgaagcagaccttctgtgaggtgcctgacctggaccggatcgtccccgtg
ctgctggagcacggcctggagcggctcccggagcactgcaggctgagcccaggggttccc
ctgaaaccaatgttggcccaccccacgcggggtgtcagcgaggtcctgaagcgctttgag
gaggccgctttcacctgcgagtacaaatacgacgggcagagggcacagatccacgttctg
gaaggcggggaggtgaaggtcttcagccggaatcaggaggacaacacgggaaggtacccc
gacatcatcggccgcatccccaagattaaactcccatcggtcacatccttcatcctagac
acagaagctgtagcttgggaccgggaaaagaagcagatccagccattccaagtgctcacc
acccgcaaacgcaaggaggtggatgcggcggagatccaggtgcaggtgtgtctgtatgcc
ttcgatctcatctacctcaacggagagtccctggtacgtgagcccctctcccgacgccgg
cagctgctccgggagaacttcgtggagacggagggcgagttcgtctttgccacctccctg
gacaccaaggacacagagcagatcgccgagttcctggagcagtcggtgaaagactcctgc
gaggggctgatggtgaagaccctggacgtggacgccacctacgagatcgccaagaggtca
cacaactggctcaagctgaagaaggactacctcgagggcgtgggtgacaccctggacctc
gtagtgattggtgcctacctgggcaaggggaagcgggccggccggtacggaggcttcctg
ctggcctcgtacgatgaggagagcgaggagttccaggccatctgcaagctcggaactggc
ttcagtgacgaggagctggaagagcaccaccagaggctccaggccttagtgctgcccgcc
ccgcgctcctatgtccgggccgacggcgcggtggcccctgaccactggctggaccccagc
gacgtgtgggaggtgaagtgcgcagacctctccctgtcccccatctaccctgcggcccgg
ggcctggtggacagtgagaagggggtctccctccgcttccctcggtttattcgtgtccgt
gaggacaagaagccagagcaggccactaccagtgctcaggtggccggtctgtacaagaag
caaagtcagattcagaaccagcagggtgctgagccggactctgagcaggaagaattctac
tag
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integrated database retrieval system
