Mycolicibacterium boenickei: MBOE_23910
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Entry
MBOE_23910 CDS
T07414
Symbol
ligD_2
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mbok
Mycolicibacterium boenickei
Pathway
mbok03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mbok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MBOE_23910 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbok03400
]
MBOE_23910 (ligD_2)
Enzymes [BR:
mbok01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MBOE_23910 (ligD_2)
DNA repair and recombination proteins [BR:
mbok03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MBOE_23910 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Thr_synth_N
Motif
Other DBs
NCBI-ProteinID:
BBX90742
UniProt:
A0A7I7N1V7
LinkDB
All DBs
Position
2492897..2495173
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AA seq
758 aa
AA seq
DB search
MERYERVRLTNPDKVLYPATGTTKAEVFDYYLSIAEVMLPHIAGRPVTRKRWPNGVAEAS
FFEKQLASSAPGWLERGTIAHKSGTTTYPVINTREGLAWIAQQAALEVHVPQWRFGADGS
QGPATRIVFDLDPGEGVTMPQLCEVAQAVRELMGDIGLTTYPLTSGSKGLHLYVPLAEPI
SSRGASVLAKRVAQQLEQSMPTLVTATMTRSVRAQKIFLDWSQNSGSKTTIAPYSLRGRE
NPTVAAPRTWDEIADPELRHLRFDEVLQRVSDDGDLLSGLDEDAPRPDKLTTYRSMRDAA
KTPEPVPQEIPATGNNDRFVIQEHHARRLHYDLRLERDGVLVSWAVPKNLPETTAVNHLA
VHTEDHPIEYLTFHGAIPKGEYGAGHMVIWDTGTYETEKFRVTDSPEDRNGEVIITLHGE
KIDGRYALIQTEGKNWLAHRMKDQKSATPEPKDFAPMLATEGSVERLKATQWAFEGKWDG
YRLLVEAEHGRLQLRSRRGRDVTAEYPQLQALAADLADHHVVLDGEVVALDEHGVPSFGE
MQNRARSTRVEFWAFDILWLDGRSLLRAKYSDRRKLLDALAAGGGLIVPEPLPGDGPEAM
VHAREHRFEGVVAKKRDSTYQPGRRSASWIKDKIWNTQEAVIGGWRQGEGGRSSGIGALL
LGVPGPDGLQFAGRVGTGFTEKELAKLKGMLAPLHTDDSPFDKPLPKLDAKGVTFVRPEL
VGEVRYSERTSDHRLRQPSWRGLRPDKTPDDVVWESGH
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggagcgctatgagcgggttcggctgacgaatccggacaaagtgctctatcccgccacc
gggaccacgaaagccgaggtcttcgactactacctgagcattgccgaggtgatgctgccg
cacatcgccgggcgcccggtgacccgaaagcgttggccgaatggggtcgccgaggcatcg
ttcttcgagaagcagttggcgtcgtcggcgccgggttggctggagcgcggcaccatcgcg
cacaaatccggcaccaccacctacccggtcatcaacacccgcgagggcctggcctggatc
gcgcaacaggcagcactcgaagtgcatgtgccgcaatggcgattcggcgccgatgggagt
cagggcccggccacccgcatcgtgttcgacctcgatccgggcgagggggtgaccatgccg
cagttgtgcgaggtggcccaggcggtgcgtgagctgatgggtgacatcgggctgacgacg
tatccgctcaccagcggaagcaagggactgcacctgtatgtgcccctggcagagccgatc
agctcccgcggtgcctcggtgctggcgaagcgggtggcccaacaactcgagcagtcgatg
cccacgctggtcaccgccaccatgacccgcagcgtgcgggctcagaagatctttctggac
tggagtcagaacagcgggtccaagaccacgatcgctccgtactcgctgcgcgggcgggag
aacccgaccgtcgccgcgccacggacgtgggacgagattgccgatccggagctgcgccac
ctgcggttcgacgaagtgctgcaacgggtttccgacgacggtgacctgctgtccggactg
gatgaggatgcgccgcgtcccgacaagctcaccacctaccgcagcatgcgcgatgccgcc
aagactcccgagccggtgcctcaggaaattccggcaaccggcaacaacgaccgcttcgtc
atccaggagcatcacgccaggcggctgcactatgacctgcgactggaacgcgacggtgtg
ctggtcagctgggcggtgcccaagaatctgccggagaccaccgcggtgaatcaccttgcc
gtgcataccgaagaccacccgatcgagtacctgaccttccacggcgcgattcccaagggg
gagtacggcgcaggccacatggtcatctgggacaccggcacatacgagacggagaagttc
cgggtcaccgacagccccgaggaccgcaacggcgaggtcatcatcacgctgcacggcgag
aagatcgacggtcgctacgccctgatccagaccgagggaaagaactggctggcgcaccgc
atgaaggaccagaagtcggccacacccgagcccaaggacttcgcgccgatgctggccacc
gaggggtccgtcgagagactcaaggcaacgcaatgggcgttcgaaggcaagtgggacggc
taccggctactggtcgaggccgagcacggccggctgcaattgcggtcgcgccgcggacgc
gatgtcaccgcggagtatccgcaattgcaggcgctggcagccgatctcgccgaccaccac
gtggtgctggatggcgaggtggtggcactcgatgagcatggggtgcccagtttcggcgag
atgcagaaccgggcccgctccacccgggtcgagttctgggcgttcgacatcctgtggctc
gacggccgttccctgttgcgtgccaaatactccgatcgccgaaagctgttggacgcgttg
gccgccggtggaggactgatcgtcccggaaccgctgcccggggacggtccggaggcgatg
gtccacgcccgcgagcacaggttcgaaggcgtggtcgccaagaaacgggattcgacgtat
cagccgggccgacggtcggcgtcctggatcaaggacaagatctggaacacccaggaagcc
gtgatcggcggctggcgccaaggcgagggcgggcgcagcagcggcatcggggcgctgctg
ctcggcgtgcccgggcccgatggcctgcaattcgccggccgcgtcggcaccggattcacc
gagaaggaactggccaagctcaaaggcatgctggccccgctgcacaccgacgactcgccc
ttcgacaagccgttgccgaagctcgacgccaaaggggtcacgttcgtgcgaccggagctg
gtgggcgaggtccgctacagcgagcgcacctcggatcaccggctgcgccaacccagttgg
cgcggtctgcggccggacaagacgcccgatgacgtggtgtgggaatcagggcactag
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