Monosiga brevicollis: MONBRDRAFT_34427
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Entry
MONBRDRAFT_34427 CDS
T01042
Name
(RefSeq) hypothetical protein
KO
K11600
exosome complex component RRP41
Organism
mbr
Monosiga brevicollis
Pathway
mbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MONBRDRAFT_34427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbr03019
]
MONBRDRAFT_34427
Messenger RNA biogenesis [BR:
mbr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MONBRDRAFT_34427
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MONBRDRAFT_34427
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDEase_I
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
5895412
NCBI-ProteinID:
XP_001750186
JGI:
34427
UniProt:
A9VBQ1
LinkDB
All DBs
AA seq
1336 aa
AA seq
DB search
MSFKAWYGDETACCLLGASCCLPARLVLLPARRVEGDDELRSVKAKLGVFEQADGSAYVE
QGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIYASFSTDQRRARSRLDRKLAEQGTRI
ARTLESVVMGQLLSRSTINLNVQVLQADGGVLATAINAASLAMMDAGVPMKDFLCACNAG
VLEGVAVLDTNHSEALARGPDLTVAVMPRTNTIVLNQDEKRQTNFELTMALKLLYHLGVE
FVCSVLSLPLALSLSRCALSLGHPILEYCQHALTHSLHPQPHSLSLSLSVFLLLSVTTNL
SLCVLCLCCLCVSVSLSVSLCLSVSHTHTHTLSLSLSLCLALGRMPLPHASTIPLGAGRA
GNMNPPLEMPESSFQGSALDQLRSMPDSGFQGSVMDQLRSGADPMDWMTESFSDAESDTS
EVSFGDPSVQILESTTSPFAPVIGLLQSILDEHPLEPVDIFESRLPFAERQIPSEEDSTP
TRLKWCIDYLKQQNIARTAHNEVNRILQSKLDRSGMDESMKRWVESYSDADNRRRRSIRR
RLSPMRRSSGSRLSVDSIKSRSASEAMLVRRLSATMGNPSRGMAMDIDFSQSADPSLFSA
LRQRRRMSQITEEDEVSWSQQPSAATSESTLELLALTPRMTTTEPRSSQPSSQPSSPHLL
HTESSGRNSDPAIFTFRRGNEDGATRERHNSIDAKSGTGIVLAREVITSARASMATTLST
GTAVSTEAVSPSNTSMVVPTANDRTQSGSPRTSPLLMRGQTVDDGSKAPLTSQSSEKTLI
ENGVAEANGEGAAPASNIGSNRGSLRQLRPSIALTHTNSTDEDDMLRVARKSSSLPPNIP
AMASDLSVTRSLATRPMRLQGNTTRVVRSFSTRSSRAVLENPLVDFDDKCLDFLDGIRDW
GLDIFKFESVAAHRPLVGIAMQVLSERNLFDNLGLDKSTAARFFARLEDGYGRYPDVLYH
NNLHAADVTHSTFLLMEAPIVRNCLNDLEVLAAVIAAAGHDVGHFGFNNTFLAATSAPLA
ILYNDQSILENHHAATSFKLMQEEGCNLLANLEADLRTTARSLVIDMILATDMAKHFTFL
AEFRSFVERINNTSCRDLTDLSDEDRQLLLQAIVHCADLAGPTKPFAISKVWAERIVNEL
FRQGDRERELQLEVGPINDRDKTNLPTSQIGFIDFIVMPLWTTWYELVGEEPDQSPIENI
TANRATWQELKDKDERTSPLARRRTGRRRPKRLKSASHRSGSRAQSAEDPDLDASTSFSQ
RESYIDDASQRASVISDLEDNVTGEVVREVATEVAATLTSKTGPATPAHARRVLNTDQAK
STPSSPYGDSTSVSVV
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcaaagcatggtacggcgacgagactgcctgctgcctgctcggcgcgtcttgc
tgcctgcctgctcggctcgtcttgctgccggctcggcgcgtcgagggagatgacgagctg
cgcagcgtcaaggccaagctcggcgtgtttgagcaggccgacggctcggcgtatgtggag
cagggcaataccaaagtgctggccattatcaatggacctcatgacagcgatgcgcgtggt
cccaatgccagtgggcatctgaccgtcagctgcgagtttatttacgccagctttagtaca
gatcaacgccgcgcgcgaagtcgtctcgaccgaaagctagcagagcagggcacgcgaatt
gcacgaacgctcgagtcggtggtcatgggtcaattgctgtcgcgatcaacgatcaatctg
aacgtgcaggtgttgcaagctgacgggggagttttggcgactgccatcaacgcagctagt
ctggccatgatggacgcaggcgtgccgatgaaggattttctgtgtgcatgcaatgccggt
gttttggagggtgtggccgtgcttgacaccaatcattctgaagcattggctcgtggacct
gatcttaccgtggccgtaatgccacgcaccaataccatcgtcttgaatcaggatgaaaaa
cgtcagacaaactttgaattgaccatggccctaaaacttttgtatcatcttggggtcgag
tttgtttgcagtgtgctctccctgcctctcgctctctctctctcgcgctgtgctctctct
ctcggccacccaattcttgagtattgccaacacgcacttacacactctctgcatccccaa
ccccattctctctctctctctctgtctgtgtttctcttgttgtccgtgacgaccaatctc
tctctctgtgtcctctgtctctgttgtctctgtgtctctgtctctctctctgtctctctc
tgtctctctgtctctcacacacacacacacactctctctctgtctctctctctctgtctc
gcgctcgggcgtatgccgttgccccacgcatcaaccatcccccttggggcgggccgcgcc
ggtaacatgaatcctccattggaaatgcccgaatcgagttttcaaggctcagcgctggac
cagctccgcagtatgccagactcgggctttcaaggctcagtgatggaccaactccgctct
ggtgctgaccccatggactggatgaccgagagcttttctgatgccgagtcggatacctca
gaagtcagctttggcgaccccagcgttcagattctcgagagcaccacctctccatttgct
ccggtcattggtctgcttcagtccattctcgatgaacatccgctcgagccagtcgacatc
ttcgaaagcagattgccattcgccgagcgacaaatcccttccgaagaggattcaaccccg
acacgcctcaagtggtgcattgactatctcaagcagcaaaacattgcccgcacagcacac
aatgaggtgaaccggatcctgcagtcgaagcttgatcgttccggcatggacgagagcatg
aagcgctgggttgaaagttactcagacgctgacaatcgccggcgtcgctccattcgccgg
cgcctttctcccatgcgccgatcttcaggcagccgtctgtcagtggatagtataaagtcc
cgtagtgctagcgaagccatgctcgtgcgtcggctgtcagccaccatgggcaatccatcc
cggggtatggcgatggacatcgacttttcccagtcggctgacccttcccttttcagcgct
ctgcgccagcgtcgacgcatgtcccagatcacggaagaagatgaggtctcttggtcacaa
caacccagtgctgctacatccgagtcgacgttggagttactggccctgacaccgcgcatg
acgacaaccgagccgcgttcctcccagccctcttcacagccgtcgtcaccccacctgttg
cacaccgagtcctctggccgcaacagcgatccagccatcttcacgtttcgccgtggcaac
gaggatggtgctactcgtgagcgccacaatagcatcgacgccaagtcgggtaccgggatc
gttctggctcgcgaggtgatcacttctgcacgcgccagcatggccacgaccttgagcacc
ggtactgccgtctcgaccgaggctgtttcgcccagcaacaccagcatggtggtcccgact
gccaacgatcgcactcaaagcggttctccacgtacctcaccccttctcatgcgaggccag
accgttgacgatggtagcaaagctccgctgacctcccaatcttctgaaaagacactcatc
gaaaacggcgtcgccgaagccaacggcgagggcgccgctcccgctagcaatattggtagc
aatcggggctccttgcgccagcttcggcccagcattgccctgactcacaccaactcgact
gacgaggatgacatgcttcgagtggcgcgaaaaagctcttcattgccgccaaatattcct
gccatggcatctgatctcagtgttactcgctcgttggctacgcgtcccatgcgtcttcaa
ggcaataccacccgcgttgtgcgctccttttccacgcgcagcagccgggccgttcttgaa
aacccgttggtggactttgatgacaagtgcttggactttctcgatggcatccgcgattgg
ggtctggacattttcaaatttgaaagcgtggcggcccaccgaccactcgttgggattgcc
atgcaagttctatctgagcgcaatcttttcgacaatcttggactcgataagagcacggcg
gcacgcttctttgcgcgcctcgaggatggctacggacgatatcctgacgttctctaccac
aacaatctgcatgccgctgacgtcacgcacagcaccttcctgctcatggaagcgcccatt
gtgcgcaattgtctcaacgatctcgaagtccttgctgccgtcatcgctgcggctggacac
gacgtgggtcactttgggttcaacaatacgtttctggcagccacctccgcccccttggcc
attctgtacaacgatcagtcaattctggagaaccatcatgcagcaacctctttcaagctc
atgcaggaagaaggatgcaatttgctggccaacctcgaggcggacctgcgaacaaccgcg
cgtagcttggtgattgatatgatcctcgcgacggatatggccaaacactttaccttcctt
gcggagttccgctccttcgttgagcgcatcaacaacaccagctgccgtgacctcacggat
cttagcgatgaggaccgtcagctgttgctccaagccattgttcattgcgctgatctggct
ggtcccaccaagccgtttgccatctccaaggtttgggccgagcgcattgtcaacgagctc
ttccgtcagggcgatcgagagcgcgagctgcagctggaagttgggcccatcaacgaccgc
gacaaaaccaatcttccaacctcccaaattggctttatagactttatcgtaatgccgctc
tggaccacttggtatgagctggtcggcgaggagcctgatcagagtccaatcgagaatatc
acggccaatcgtgccacctggcaggagctgaaagacaaggacgagcgaacttctcctttg
gcgcgacgccgcacaggtcgtcgcaggccaaagcggctgaaatctgcctcccatcgcagc
gggtctcgcgctcaatcggccgaggatcccgatctggatgcctctactagttttagccag
cgcgagtcatatattgacgatgccagccaacgtgcctcggtcatcagtgacttggaggac
aacgtcactggtgaggttgtacgcgaggtggcgacagaggtggctgcaacgctgacctct
aaaacagggcctgccactccggctcacgcgcggcgcgtgttgaacacggatcaagccaag
tccacgccgagctctccctacggcgattcgaccagtgtctcagtcgtttaa
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