Mycobacterium branderi: MBRA_26480
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Entry
MBRA_26480 CDS
T07397
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mbrd
Mycobacterium branderi
Pathway
mbrd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mbrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MBRA_26480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbrd03400
]
MBRA_26480 (mfd)
Enzymes [BR:
mbrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MBRA_26480 (mfd)
DNA repair and recombination proteins [BR:
mbrd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MBRA_26480 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
LSDAT_prok
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBZ12453
UniProt:
A0A7I7W7M3
LinkDB
All DBs
Position
2568604..2572224
Genome browser
AA seq
1206 aa
AA seq
DB search
MAPIMTETPIAGLVELALRAPTFTQLIEQSADRPAELTLVGPASVRLFVAAALARQGPLL
VVTATGREADDLTAELHGVFGDAAAMFPSWETLPHERLSPGVDTVGARLMLLRRLAHPDD
SRLGPPLRVVVTTVRSLLQPMTPQLGELEPLTLAVGDEIAFEDVIARLVELAYTRVDMVG
RRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFAVADQRSIPELEVDTVVAVACR
ELLLTDDVRRRAAELSTQRPRTDNTVTGSVADMLAKLAEGIPVDGMEALLPVLRPDELSL
LTDQLAAGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAALGSDAPIDVEQLGGSGFR
GFAEVREAARTSGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRAHVATGG
CAAVVAPGTGTAHRVVEQLAESDTPATMLEPGATPKPGVVGVLKGPLHDGVVIPGAELVI
ITETDLTGNRVTATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERIVGGAR
REYLVLEYASSKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTKARKAV
REIAGELVSLYAKRQAAPGYAFGPDTPWQAEMEDAFGFTETVDQLTAIQEVKADMEKPVP
MDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLETFRERMAGFPVTVK
GLSRFTDPAGSRAVIDGMADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEH
IKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAA
LRRELLREGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMNEDVLERTVQGFWNRE
YDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPQHAP
LTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVGE
AVEAYRAAADGQTVTSPEEPKEVRIDLPVDAHLPPDYIPSDRLRLEGYRRLAAAGSDDEI
AAVVEELTDRYGALPEPAQRLVAVARLRLLCRGVGITEVSAPSEATVRLAPMALPDSAQV
RLARLYPGARYRATTATVQVPIPRAGGVGAPRIRDLELVQMVADLVSALDGNPVGITKAV
ASEQAR
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccatcatgaccgaaaccccgatcgcggggctggtggagctggcgctgcgtgcg
ccaacgtttacccaactcatcgagcaaagcgccgatcgacccgccgaattgacgctggtc
ggacccgccagcgtccgactgttcgtggccgccgcgctggctcgtcagggcccgctgctg
gtggtcacggccaccggccgggaagccgacgacctgaccgccgagttgcacggcgtcttc
ggcgacgccgccgcgatgttcccatcctgggagacgctgccgcacgaacggctctcgccc
ggcgtcgacaccgtcggcgcgcgactgatgctgctgcgccggctggcacaccccgacgac
tcgcggctcggcccgccgctgcgggtggtggtgaccacggtgcgttcgctgctgcagccg
atgacgccgcagctgggtgagctggaaccgttgacgctggccgtcggcgacgagatcgcg
ttcgaagacgtgatcgcccggctggtcgagctggcctacacccgggtcgacatggtcggc
cggcgcggcgaattcgccgtccgcggcggcattctcgacgtttttccgccgaccgccgag
cacccggtgcgcgtcgagttctggggcgacgaagtcagcgagatgcggatgttcgccgtc
gctgaccagcgatccatccctgagctcgaggtcgacaccgtggtcgccgtcgcctgccgg
gaactgctgctgaccgacgacgtgcgccggcgcgccgccgaactgagcacgcagcgcccg
cgcacagacaacaccgtcaccggcagcgtcgccgacatgctggccaagctcgccgagggc
atcccggtcgacgggatggaggcgctgctgccggtgctgcggcccgacgagctgtccttg
ctgaccgatcagctggccgccggcaccccggtgctggtctgcgacccggaaaaggtccgc
acccgcgccgccgacctgatcaagaccggtcgcgagttcctggaggcatcctggtcggtg
gccgcgctcggttcggacgcgccgatcgacgtcgagcaactcggcggctcgggtttccgc
gggttcgccgaggtacgagaggccgcgcggacatccgggcacccgtggtggacgctgagc
cagctctccgacgagtcggcgatcgagctggacgtccgcgccgcgccgtcggcccgcggc
catcagcgcgacatcgacgagatcttcgcgatgctgcgcgcgcatgtggccaccggcgga
tgcgccgccgtcgtcgcaccgggaaccggaacagcgcaccgcgtcgtcgagcagcttgcc
gaatccgacacgcccgcaacgatgttggagcccggcgcgactcccaagcccggcgtcgtc
ggggtgctcaaggggcccctgcacgacggcgtggtgattccgggcgccgagttggtgatc
atcaccgagaccgacttgaccggcaaccgggtgactgccaccgagggcaagcggctggcg
gccaagcgccgtaacgtcgtcgacccgctggcgctgaccgccggcgatctggtggtgcac
gaccagcacggcatcggacggttcgtggagatgaccgaacgcattgtcggcggcgcgcgg
cgcgaatatttggtgctggagtacgcgtcgagcaagcgcggcggcggatcggacaagctg
tacgtgccgatggattcgctggaccagctgtcgcggtatgtcggcgggcaggcacccgcg
ctgtcgcggctgggcggcagcgactgggccaataccaaaaccaaggcgcgcaaagccgtt
cgcgagatcgccggcgagctggtgtcgctgtacgccaagcggcaggccgcgccgggctac
gcgttcgggccggacacgccgtggcaggccgagatggaggacgcgttcgggttcaccgag
accgtcgaccagctgaccgcgatccaagaggtcaaggccgacatggaaaagccggtgccg
atggaccgggtgatctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgggcg
gcgttcaaggcggtgcaggacggcaagcaggtcgcggtgctggtgccgacgacgctgctg
gccgaccagcacctggagacgttccgggagcggatggccgggtttccggtgaccgtcaag
gggctgtcgcggttcaccgatcccgccgggtcccgcgcggtgatcgacgggatggccgac
gggtcggtcgacatcgtgatcggcacgcaccggctgctgcagaccggggtgcgctggaag
gacctcggcctggtggtcgtcgacgaggagcagcggttcggcgtcgagcacaaggagcac
atcaagagcctgcgcacgcacgtcgacgtgctgaccatgagcgccaccccgatcccgcgc
acgctggagatgagcctggccggcatccgggagatgtcgacgatcctgaccccgcccgag
gagcgctacccggtgctgacctatgtgggcccgcacgacgacaagcagatcgccgccgcg
ttgcgccgcgagctgctgcgcgagggccaggcgttctacgtgcacaaccgggtcagctcg
atcgacgccgccgccgcgcgggtgcgcgaactggtgccggaggctcgcgtcgttgtcgcg
cacggccagatgaacgaggacgtgctggaacgcaccgtgcaggggttctggaaccgcgaa
tacgacatcttggtgtgcacgacgatcgtggagacgggcctggacatttcgaacgccaac
acgctgatcgtcgagcgggccgacacgttcgggctctcccagctgcaccagctgcggggc
cgggtcggccgcagccgcgagcgcggctacgcctacttcctgtatccacagcatgcgccg
ctgaccgaaaccgcctacgaccggctggccacgatcgcgcagaacaacgagctgggcgcg
ggcatggcggtggcgatgaaggatctggagatccggggcgccggcaacgtcttgggcgtc
gagcaatccgggcacgtggccggggtgggcttcgacctgtatgtgcggctggtaggtgag
gccgtcgaggcgtaccgggcggccgccgacggccaaaccgtcaccagccccgaggagccc
aaggaagtgcggatcgatctgccggtcgatgcgcacctgccgcccgactacatccccagc
gaccggctgcggctcgaggggtaccggcggctggccgcggcgggctccgacgacgagatc
gccgcggtcgtggaagagctcaccgaccgttacggcgctctgcccgagccggcgcagcgg
ctggtggcggtggcccggttgcggttgctgtgtcgtggagtgggtatcaccgaggtgtcg
gcgccgtcggaggcgacggtgcggctggctccgatggcactgcccgattccgcccaggtg
cggctggcgcggctctatccaggcgcgcgatatcgcgcgacgacggcgacggtccaggtt
ccgatcccgcgggccggcggggtcggcgcgccccgaatccgcgatctcgaactggtccag
atggtcgcggatctggtttcggcgctggacgggaacccggttggtataacgaaggccgtg
gcgagcgagcaggcccgatga
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integrated database retrieval system
