Microbulbifer bruguierae: PVT68_08285
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Entry
PVT68_08285 CDS
T09733
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mbrg
Microbulbifer bruguierae
Pathway
mbrg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mbrg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PVT68_08285 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbrg03021
]
PVT68_08285 (rpoB)
03400 DNA repair and recombination proteins [BR:
mbrg03400
]
PVT68_08285 (rpoB)
Enzymes [BR:
mbrg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PVT68_08285 (rpoB)
Transcription machinery [BR:
mbrg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PVT68_08285 (rpoB)
DNA repair and recombination proteins [BR:
mbrg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PVT68_08285 (rpoB)
BRITE hierarchy
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RnfC_N
7TMR-HDED
Pox_RNA_pol_35
Motif
Other DBs
NCBI-ProteinID:
WGL18282
LinkDB
All DBs
Position
complement(1925464..1929537)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPKVMDVPFLLAIQLDSYRNFTQADKRPDERLDVGLQAAFKSV
FPIVSYSGNAALEYVSYTLGKPAFDVKECTLRGVTYACPLRVRVRLIIYDKESANKSIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYAARV
IPYRGSWLDFEFDPKDLVYVRIDRRRKLPATILLRALGFSSQEMLEMFFETSNFTLNNET
VSLKLIPSRLRGDVASFDIKDDKGKVIVEEGRRITPRHIRQLEKAGVETLEAPVTYANGR
VLAHDIIDESTGEVAIECNTEITDEVVNKLRVLNIQQFETLYTNDLDCGPFVSDTLRADP
SRTQLEALVEIYRMMRPGEPPTKESAESLFENLFFSDERYDLSAVGRMKFNRRLGREDET
GQGTLSKEDIVDVLKTLIEIRNGRGMVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARANHYGFLESPYRKVV
DGQVTDQIEYLSAINEANYVVAQASAAVDENGRFTDDLVSVRYQYEFTLKTPDEIQYMDV
SARQVVSVAAAMIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERTVARDSGVC
VVAKRGGVIERVDASRVVVRVRDDEVEAGDAGVDLYGLTKYTRSNQNTCINQRPIVKTGD
VVERGDILADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE
LTCIARDTKLGSEEITADIPNVGESALNKLDESGIVYIGAEVGAGDILVGKVTPKGEAQL
TPEEKLLRAIFGEKASDVKDTSLRAPSGTRGTVIDVQVFTRDGLQKDQRSLAIEKAQLDE
VRKDLNEEYRIVEGATFERLAAALEGQAVAGGKGVKKGDVLNAEILSALPREDWFKLRMA
EESLNEQLEKAEAQLKERRKLLDEAFEDKKKKLESGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVISVIKPVEDMPYDENGDPVDVVLNPLGVPSRMNVGQVLEMHLGMAAKG
LGVKIDRMVKEKQEAAKVRGFLEEVYNSTAGRVEDLNELTDQEVLAMAENLRRGVPMATP
VFDGAAEPEIKKLLRLADIPDSGQITLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTKMY
KNIVDGDHRMEPGMPESFNVLVKEIRSLGMNFELENE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggattttggcaaactgcctaag
gtcatggatgtgcctttcctgcttgcgatacagctcgattcttatcgcaatttcacacag
gctgacaagcgccctgacgagcggctggatgtcggtctgcaagcggcgttcaagtcagta
tttccaatagtcagctactctggcaatgccgctctagagtacgtgagctataccctcggc
aaacccgccttcgatgtcaaggaatgtaccctgcgcggtgttacctacgcctgcccgctg
cgcgtgcgtgtgcgtctgatcatttacgataaagaatctgcgaataagtccatcaaggac
atcaaggagcaggaagtctacatgggcgaaattccgctcatgaccgagaacggtaccttc
gtaattaacggtaccgagcgcgtgatcgtgtcccagctgcaccgctccccgggtgtattc
ttcgatcacgacaaaggcaagacccactcttccggtaagctgctgtacgctgcgcgggta
atcccttaccgcggttcatggctcgacttcgagttcgacccgaaagatctggtttacgta
cgtatcgaccgtcgccgcaaactgccggcgactatcctgctgcgcgccctgggtttcagc
tcccaggaaatgctggaaatgttcttcgaaaccagcaatttcaccctgaacaacgaaacc
gtcagcctgaaactgatcccgtcgcgcctgcgtggtgatgttgcctctttcgatatcaaa
gacgacaagggcaaggtcatcgttgaggaaggccgccgtatcactccgcgccacatccgt
cagctggaaaaagccggcgtggaaactctggaagcgccggttacctacgccaatggtcgg
gtactggcgcacgacatcatcgacgagtccactggtgaagtggccatcgaatgtaatacc
gaaattaccgatgaggtcgtcaacaagctgcgtgtcctgaacatccaacagttcgagacc
ctgtacaccaacgacctggactgtggtccgttcgtgtccgacaccctgcgtgccgatcct
tcccgcacccagctggaagcgctggtagaaatctaccgcatgatgcgcccgggcgagccg
cccaccaaggagtctgcggagtccctgttcgagaacctgttcttctccgacgagcgctac
gatctgtccgcggttggtcgcatgaagttcaaccgtcgtctgggtcgtgaagacgagacc
ggccagggtaccctcagcaaggaagacatcgttgatgttctgaaaaccctgatcgagatc
cgcaacggtcgcggtatggtggacgatatcgaccacctgggtaaccgtcgtgtacgttcc
gtgggtgagatggcggaaaaccagttccgcgtcggcctggtgcgtgtagagcgcgcggtg
aaagagcgtctgtccatggcggaatccgaaggcctgatgccacaggatctgatcaacgcc
aagccggtggctgccgcggtgaaagagttctttggctcttcccagctgtcccagtttatg
gaccagaacaacccgctgtcggaagtgacccacaagcgccgtgtgtccgcgcttggcccg
ggtggtctgactcgcgagcgcgcgggcttcgaagtgcgcgacgtgcacccgacccactac
ggtcgcgtgtgtccgatcgaaaccccggaaggtccgaacatcggtctgatcaactcgctg
gcgacctacgcccgcgccaaccactacggcttcctggaaagcccgtaccgcaaggtagtg
gacggtcaggtaactgaccagatcgaatatctgtctgcgatcaacgaagccaattacgtg
gttgcacaggcgtctgcagcagttgatgagaacggtcgttttaccgatgacctggtcagc
gtgcgttaccagtacgaattcaccctgaagaccccggacgaaatccagtacatggacgtg
tccgcccgtcaggtagtgtccgtggccgcggcaatgattccgttcctggaacacgatgac
gccaaccgtgcactcatgggttccaacatgcagcgtcaggcggttccgaccctgcgtgcc
gagaagccgctggtaggtaccggtatggagcgtaccgtagcgcgcgactccggtgtatgt
gtggtagcgaagcgcggtggtgtgatcgagcgtgtcgatgccagccgtgtagttgtacgc
gtacgcgacgacgaagtggaagctggtgacgccggtgtagacctgtacggtcttaccaaa
tacacccgttccaaccagaatacctgtatcaaccagcgcccgatcgtgaagaccggtgat
gtggttgagcgtggcgatatcctggccgacggcccgtccgttgacctgggcgagctggcc
ctgggccagaacatgcgcatcgcgttcatgccctggaacggctacaacttcgaggactcc
atcctcgtgtccgagcgtgtagttcaggaagatcgcttcaccaccatccacatccaggag
ctgacctgtattgcccgtgacaccaagctgggcagcgaggaaatcaccgcggatatcccc
aacgtgggtgagtctgcgctgaataagctggacgagtccggcatcgtgtatatcggtgcg
gaagtgggtgccggcgatatcctggtgggcaaggtaacgccgaaaggcgaagcccagctg
accccggaagagaagctactgcgtgcgatctttggtgagaaggcgtccgacgtaaaagat
acttctctgcgcgcgccttccggcactcgcggtaccgtgatcgacgtacaggtgttcacc
cgcgacggtctgcagaaagaccagcgctctctcgccatcgagaaagcccagctggacgaa
gtgcgcaaggatctcaatgaggaataccgcatcgttgaaggcgctaccttcgagcgtctg
gctgccgcactggaaggccaggccgttgccggcggtaagggcgtcaagaaaggcgacgtg
ctgaacgctgaaatcctgtccgcgctgccgcgcgaagactggttcaaactgcgcatggcg
gaagagagcctgaatgagcagttggaaaaagccgaagcccagctgaaagagcgccgcaag
ctgctcgacgaagccttcgaagacaagaagaaaaaactggaatccggcgacgatctggcg
cccggcgtgctgaaaatcgtcaaggtgtacctggcgatcaaacgtcgtatccagcccggt
gacaaaatggccggccgtcacggtaacaaaggtgttatctccgtgatcaagccggtcgaa
gatatgccgtacgacgaaaacggcgacccggtagatgtggttctgaacccgctgggtgta
ccgtcgcggatgaacgtcggccaggtactggaaatgcacctgggcatggcagccaagggc
ctcggcgtgaagattgatcgcatggtcaaggaaaagcaggaagcagccaaagtgcggggc
ttcctggaagaggtctacaactccaccgctggccgtgttgaggatctgaacgagctcacc
gaccaggaagttctggcaatggccgaaaacctgcgtcgcggtgtacccatggcgactccg
gtgttcgatggtgcggcagagcccgagatcaagaagctgctgcgtctggcggatatcccg
gattccggtcagatcaccctgttcgacggccgtaccggcgacgcgttcgagcgtccggtt
accgtgggctacatgtacatgctgaagctgaaccacctggtagacgacaagatgcacgcg
cgttctaccggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggtgagatggaggtgtgggcactggaagcttacggtgccgcctac
accctgcaggaaatgctcacggtcaagtccgatgacgtggaaggtcgtaccaagatgtac
aaaaacatcgtggacggcgaccaccgcatggagccgggcatgcccgaatccttcaacgta
ctggtcaaggaaatccgctcgctgggtatgaacttcgagctggaaaacgagtaa
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integrated database retrieval system
