Methylocystis bryophila: B1812_16500
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Entry
B1812_16500 CDS
T04837
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mbry
Methylocystis bryophila
Pathway
mbry03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mbry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B1812_16500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbry03400
]
B1812_16500
Enzymes [BR:
mbry01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B1812_16500
DNA repair and recombination proteins [BR:
mbry03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B1812_16500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ARN82418
UniProt:
A0A1W6MXU8
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All DBs
Position
complement(3449467..3451926)
Genome browser
AA seq
819 aa
AA seq
DB search
MAGGVTQDPLARYRAKRDFAKSGEPQGQTARKGGRRLVVQRHFARREHFDLRLEIDGVLK
SWAVTRGPSANPSDKRLAVRTEDHPLEYGSFEGAIPKGEYGAGVVELWEDATYEPLNGDP
AQALAKGKLEFLTMGARMRGRWALIAMKKRDKAENWLLIKERDEFAESDDSLAERFDTSV
ASGRRREEIERGAPSRREAGQRETRAKRDTRQGARAPTPAFTPPQLCETSEQPPQGEDWL
FEMKYDGYRLELATGAEGAKAYTRTGLDWTTRFPTLARAAFELPCKNALLDGEAVVFDAR
GLSDFTALVAALEARDQAPIEYCAFDLLFLDGQDLRDLPLRSRKEKLRKLLEGHSGAIRY
AEEIRGGGASVFAQVTTAGAEGIVAKREDARYRSGRFEDWRKIKGDKREDVQIIGYRPSK
VGESFASLLAARETPEGLRYVGSIGTGYGARTREKLAPLIAEANKTKPAVSAAAKLPKDA
IYLEKPFSAEARFGGWTGEGLMRQARFLGVREDRARPRKSEPARNSKALTPVTHPDRVVY
PADGITKGDIAAYYERIWRRIAPHLHERVVSLVRAPDTIDNLFFQRHPLPGMNGSVLKVD
CDNQTYISLNGEAGLHAAAQFGAIEIHGWMARRDDLDHPDRLVFDLDPGDDVSFILVVQA
AADLRDYLAALGLRTWPMVTGGKGVHLAAPLDRSLAWPETEAFAEGFARVVAQQQRKRFV
ATMSKERRKGRIFIDWLRNKKKATAILPWSLRARSGAPVAAPVSWKTLASLDTGSAFNIH
SAPQLPNEWDAFDNARQSISRESRELIARVLAGGARRAL
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
gtggcgggcggcgtaactcaagacccgcttgcgcgctaccgcgccaagcgcgatttcgcc
aagtccggcgagccgcaaggacagacggcgcgcaagggcggacggcgcctcgtcgtgcag
cgccactttgcgcgacgcgagcactttgatttgcggctagagatagacggcgttctcaag
agctgggcggtgacgcgcgggccttccgctaatcccagcgacaagcgcctcgctgtacgg
accgaggatcatccgctcgaatacggcagctttgaaggcgcaatccccaaaggcgaatat
ggcgccggcgtcgtggagctctgggaggatgcgacctatgaaccgctaaacggagatccg
gcccaggcgcttgccaagggcaagctcgaatttttgacgatgggcgcgcgcatgcgcgga
cgctgggccttgatcgccatgaagaagcgcgacaaggctgaaaattggctgctgatcaag
gaacgtgacgagttcgccgaatccgacgacagtctcgccgaacgcttcgacaccagcgtc
gcaagcgggcgcaggcgcgaggagatcgaacgcggcgccccgtcccggcgggaggctggg
caaagagaaacgcgcgcgaagcgtgacacccggcaaggcgctcgcgcgcccactccggct
ttcacgccgcctcagctttgcgaaacgtccgagcagccgccgcagggcgaggattggcta
ttcgagatgaaatacgacggctatcgcctcgagctcgccaccggcgccgagggcgcaaag
gcatatacgcgcacggggctcgattggacgactcgtttccccaccctggcgcgcgccgcc
ttcgagctgccttgtaagaacgcgctcctcgacggcgaggcggtcgtgttcgacgcgcgc
gggctctccgatttcacggcgctcgtcgccgccttggaagcgcgcgatcaagctcccatc
gagtactgcgctttcgatctcctcttcctggatggccaagacttgcgcgatctcccgctg
cgcagccgcaaggagaagctgcgcaagcttctcgaagggcacagcggagccattcgctac
gcggaagagattcgcggcggcggcgcgtccgttttcgcgcaggtgacaacggcgggcgcc
gaggggatcgtcgccaagcgagaagacgcgcgctaccgctcgggccgcttcgaggattgg
cggaagatcaagggcgataagcgcgaggatgtccaaatcatcggttatcggccctcgaag
gtcggcgagagcttcgcatcgcttctcgcggcaagagagacgcccgaaggcctgcgctat
gtggggagcatcggcacgggctatggcgcgcgcacgcgcgagaagctcgcgccgctcatc
gctgaggcgaacaaaacaaagccagcagtcagcgctgcagcaaaattgccgaaggacgcg
atctaccttgagaaacccttctcagcggaagcgcgatttggcggatggacgggagaaggc
cttatgcgtcaagcccgcttcctgggggtgagagaggatcgcgcgcgcccgcgaaagtcc
gagccggcgcggaacagtaaggcgttgacgccggtcacgcatcccgaccgcgtcgtctat
cccgctgacggaatcaccaagggcgacatcgccgcctattatgagaggatctggcgccgc
atcgcgccgcacctccacgaacgcgtcgtgagcctcgtgcgcgcgcccgacacaatcgac
aatctcttctttcagcgccatcccttgccgggcatgaacggaagcgtcttgaaggttgac
tgcgacaaccaaacatacatttcgctcaacggagaggcgggcctgcatgcagccgcgcag
ttcggcgcgatcgagattcatggatggatggcgcggcgcgacgatctcgatcatccggac
cggctggttttcgatctcgacccgggtgacgacgtgagcttcatcctggtcgtccaggcg
gccgcggatttgcgcgattatctcgccgcactcggcctgcgcacctggcctatggtcact
ggaggcaaaggcgtgcatctcgcagcgccccttgatcgcagcctagcctggcccgaaacg
gaagctttcgcggaaggcttcgcgcgcgttgtcgcacagcagcaacgcaagcgcttcgtg
gccaccatgagcaaggagaggcgcaaggggcgcatcttcattgactggctgcgcaacaag
aagaaggcgacagcgatcctaccgtggtcgctccgcgcgcgttccggcgcgccagtcgcg
gctccagtctcatggaaaacactggcctccctcgatacgggctccgctttcaacattcat
tcggcgccgcagcttccgaatgaatgggacgcgttcgacaacgcgcgtcagagcatttct
cgcgagtcgcgcgagctgatcgcgagagtgctagcgggcggcgcaaggagagcgctttag
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