Methylotuvimicrobium buryatense: EQU24_12440
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Entry
EQU24_12440 CDS
T05995
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mbur
Methylotuvimicrobium buryatense
Pathway
mbur03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mbur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EQU24_12440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbur03400
]
EQU24_12440
Enzymes [BR:
mbur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EQU24_12440
DNA repair and recombination proteins [BR:
mbur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EQU24_12440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Helicase_C_2
Glyco_tran_WecG
PpnN_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QCW82959
UniProt:
A0A4P9UNK4
LinkDB
All DBs
Position
complement(2788665..2792126)
Genome browser
AA seq
1153 aa
AA seq
DB search
MSKHQDLIFPTEISLQPHTISIWTGLNGCGDSLALASAIQQEKRLFVIITQDSQTALRLE
HELAFFLQNKHPILHFPDWEILPYDVFSPLPDIVSERLKTLAVLPEVQRGALIVPVSTLM
HRLAPRDHVLANSFSIAVGDTFNLELNRSKLESVGYQCVSQVYQHGEFAVRGAIVDLFPM
GSRVPYRIELFDEDIESIRTFDPETQLSVEKIDRIQLFPAREFPFTDEAIKHFRQAFRTR
FPNASQKNSLYLDVSKGVAFGGIEYYLPLFVESTAALFDYLPDSAVLVTADNFAQSTESF
YSEAKERYEQRKYDVERPLLEPETLFLSPGEMRERTDKFTRITLSQTQLGGISEIDFRCK
PLPEVTIDAKLKEPARALQQFLDEFPGKVLFVAETAGHREDLIGKLSKFGIKTQQVEHWH
AFLQSEQSPCMVVAPMDQGLWLDSPPLAVITESQLSGEKVQQRRRRRKSAAKELENIVNN
LNELTIGSPVVHVEHGVGRYMGLQTLELGGMTAEFLMLEYANNDKLYVPVSSLNLIGRYT
GISPEDAPLHRLGGDQWSKAKKKAMERIRDVAAELLDIHAKRAMKKGHAFDVDNTEYQAF
AAAFPFEETPDQQTAIEAILEDMASPQPMDRVICGDVGFGKTEVSMRAAFIAVQSGKQVA
VLVPTTLLAQQHYQNFRDRFADWPVRIEVMSRFVTPKQQKAILEDLEQGKVDIVIGTHKL
LSNEIKYRELGLVVIDEEHRFGVRQKEHFKKLRNEIDMLTLTATPIPRTLNMAMSGLREI
SIIASPPPNRHAIKTFISEWIDSQIKEACQREIKRGGQVFFLHNDVKTMEKMARQLENLV
PEARIEIAHGQMPERELEKIMLDFYHQRFNLLLSTTIIESGIDIPSANTIVINRADKLGL
AQLHQLRGRVGRSHHRAYAYFVIPPKTVMTKDALKRLEALEASGDLGAGFMLSSHDMEIR
GAGELLGDEQSGQIQEIGFTLYTDLLERAVNALKSGRQPELDAPMETGPEVDLQSPALIP
EDYLPDIHARLVLYKRIASADTHDDLRALQIEMIDRFGLLPEPVKTLFSVAELKQQAEKL
GIKKIEANAGGGRIVFSHEPKIDAASLIELIQTQAQVYKFDGADKLRFIMPFNATEEKLE
FIEALLKQLAPAD
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacatcaagatttgattttccccaccgaaatttcattacaaccgcataccatt
tcaatttggacaggtttaaacggttgcggcgattcgcttgcgttggcatcggcgatacaa
caagaaaagcgcttattcgtgattattacgcaggatagtcaaactgcattgcgtcttgag
catgaactggcgttctttctgcaaaataagcatcccattttgcatttccccgactgggaa
atcctgccttacgatgtattttcgccgctgccggacatcgtctcggaacgcctgaaaacg
ctcgcggtgctgcccgaagtacaacgcggcgcgctgatcgtaccggtctcgactctaatg
cacaggcttgcgccgcgagatcatgttctggccaacagtttttcaatcgccgtcggcgat
accttcaatctggagctgaaccgctcaaaactcgaaagcgtcggctatcagtgcgtgtct
caggtctatcagcatggcgaattcgcggtgcgtggcgccatcgtagatctgtttccgatg
ggcagcagggtgccgtaccgtatcgaattgttcgacgaagacatcgaatcgatccgcacc
ttcgatcccgagacgcagctttcggttgaaaaaatcgaccgcatacaattgtttccggcg
cgcgaatttccgttcaccgacgaggcgatcaagcatttccgccaagcctttcgaacccgt
ttcccgaatgcctcgcagaaaaacagtctttatctagatgtcagcaaaggcgtcgcgttc
ggcggcatcgaatattatttgccgttgttcgtcgaaagcaccgcagcgctattcgattat
ctgcccgattctgcggtgttggtcacggccgacaattttgcgcaaagcaccgagtctttc
tacagcgaggcaaaagagcgttacgaacaacgcaaatatgatgtggagcggccgctgctc
gaacccgaaaccttgttcctgtcgccgggagaaatgcgcgagcgtaccgataagtttact
cgtattacgttgagccaaacccagctcggcggaattagcgagattgattttcgctgcaag
ccgctgcccgaggtaacgatcgacgcgaagttgaaggagccggcgcgggcgttgcaacag
tttctcgacgagtttccgggcaaggtattgttcgtcgccgaaacggccggacaccgcgaa
gacttgatcggtaaattgagcaaattcggcattaagacccaacaagtcgaacattggcac
gcgtttctgcaatccgaacagtcgccgtgcatggtcgtcgcgccgatggatcaaggcttg
tggctggattcgccgccgctcgccgtgattaccgaaagccagttgagcggcgaaaaagtc
caacagcgccgccgtcgccgtaaatcggccgcgaaagaactcgaaaacatcgtcaataat
ctgaacgaattgacgatcggctcgccggttgtgcatgtcgagcacggcgtcggacgctat
atgggactgcaaaccctcgagctcggcggcatgaccgcggaattcctgatgctcgaatac
gcgaacaacgacaaactctacgtgccggtctcgtcgctgaacctgatcggccgctatacc
ggcatcagccccgaagacgcgccgctgcacaggctcggcggcgaccagtggagtaaggca
aagaaaaaggcgatggaacgcattcgcgacgtcgcggccgaattgctcgacatccacgcc
aaacgcgcgatgaaaaaaggccatgccttcgatgtcgacaacaccgaataccaagccttt
gcggccgcttttccgttcgaggaaacgccggatcagcaaaccgcgatcgaagcgattctc
gaagacatggccagcccgcagccgatggatcgcgtgatctgcggcgacgtcggcttcggc
aagaccgaagtgtcgatgcgcgcggccttcatcgcggtgcaaagcggcaagcaagtcgcg
gttctggtaccgaccacgctgttggcgcagcagcattatcagaatttccgcgatcgcttc
gccgactggccggtgcgcatcgaagtgatgtcgcgttttgtcacgccgaagcagcaaaaa
gcgattctcgaagacctggagcagggcaaggtcgatatcgtgatcggtacgcataaactg
ttgtcgaacgagatcaaataccgcgagctcggcctggtcgtcatcgacgaggaacaccgt
tttggtgtgcgccagaaggagcatttcaagaagctgcgcaacgagatcgacatgctgacg
ctgaccgcgacgcctattccgagaaccttgaacatggcgatgtcgggtctgcgcgaaatc
tcgatcatcgcgagcccgccgccaaaccgccacgcgatcaagaccttcatcagcgaatgg
atcgactcgcaaatcaaagaggcctgtcagcgcgaaatcaagcgcggcggtcaagtgttc
tttctgcataacgacgtcaaaacgatggagaaaatggcgcgccagctcgaaaacctggtg
cccgaggcgcgcatcgaaatcgcgcacggccagatgcccgagcgcgaactggaaaaaatc
atgctcgatttctatcaccagcgcttcaacttattgctcagcacgacgattatcgaaagc
ggcatcgacatacccagcgcgaatacgatcgtgatcaatcgcgccgacaagctcggtctc
gcgcaattgcatcaattgcgcggccgggtagggcgctcgcatcatcgggcctatgcctat
ttcgtgattccgccgaaaacggtcatgaccaaggacgccttaaaacggctcgaagcgctc
gaagcgtcgggcgacctcggcgcgggcttcatgctgtcgtcgcacgacatggaaattcgc
ggtgccggcgaattgctcggcgacgaacaaagcgggcaaatccaggaaatcggcttcacg
ctctacaccgatctgctcgaacgcgcggtcaacgcattgaaatcaggccgccagcccgag
cttgacgcgccgatggaaaccggtcccgaagtcgatttgcagtcgccggcattgattccc
gaagattacctgcccgacatccatgccagactggtgctgtataaacgcatcgccagcgcc
gacacgcacgacgacctgagagccctgcaaatcgaaatgatcgatcgcttcggtctgctg
ccggaaccggtcaagacgttgttcagcgttgccgaattgaaacagcaagccgaaaaactc
ggcatcaagaaaatcgaagcgaacgccggcggcggccgcatcgtgttctcgcacgaaccg
aagatcgacgcggccagtctgatcgaattgatacaaacgcaggcgcaagtctacaaattc
gacggcgcggataaattgcgcttcatcatgccgttcaacgcaacggaagaaaagctggag
ttcatcgaggcattgttgaaacagttggcgccggcggattga
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