Methanosarcina barkeri MS: MSBRM_0490
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Entry
MSBRM_0490 CDS
T03838
Name
(GenBank) Transcription initiation factor B
KO
K03124
transcription initiation factor TFIIB
Organism
mby
Methanosarcina barkeri MS
Pathway
mby03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mby00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MSBRM_0490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mby03021
]
MSBRM_0490
Transcription machinery [BR:
mby03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
MSBRM_0490
Prokaryotic type
Archaeal type
TFB
MSBRM_0490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
TF_Zn_Ribbon
OrfB_Zn_ribbon
Sigma70_r4
Lar_restr_allev
LysW-like_globular
RPA_interact_C
Zn_Tnp_IS1595
Trm112p
Zn_ribbon_SprT
HTH_AsnC-type
HTH_Tnp_ISL3
A2L_zn_ribbon
Ribosomal_S27e
DUF35_N
Motif
Other DBs
NCBI-ProteinID:
AKB53488
UniProt:
A0A0E3QSF0
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All DBs
Position
607848..608861
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AA seq
337 aa
AA seq
DB search
MVEVERVRYSDTLEREKIRAMIKARKEKQKEQSFEKEKAVCPECGSRNLVHDYERAELVC
GDCGLVIDADFVDEGPEWRAFDHDQRMKRSRVGAPMTYTIHDKGLSTMIDWRNRDSYGKS
ISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVRETAAVVYRKA
VDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSRVSRKEIGRTYRFISRELALK
LMPTSPIDYVPRFCSGLNLKGEVQSKSVEILRQASEKELTSGRGPTGVAAAAIYIASILC
GERRTQREVADVAGVTEVTIRNRYKELAEELDIEIIL
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggtagaagtcgaaagagttcgctattcggacactcttgaaagagaaaaaatacgtgcc
atgatcaaagctcgcaaagagaagcaaaaggagcaaagttttgagaaagaaaaggccgtg
tgtccagaatgcggcagcagaaaccttgttcacgactatgagcgagccgaactcgtgtgc
ggggactgcggacttgtcattgatgccgattttgtggatgaaggcccagaatggcgagct
ttcgatcatgatcaacgtatgaagcgttcccgtgtgggtgcgcccatgacatacacaatc
cacgacaaagggctttccacaatgattgactggaggaaccgcgactcctatggaaagtca
atctcttccaaaaatcgtgctcaactctatcgtttaagaaaatggcagcgtagaatccgt
gtaagtaacgcaactgaaagaaaccttgcatttgcactatctgaactggatagaatggct
tctgctctcggtcttccgagaactgtgcgggaaaccgcagctgtcgtctacagaaaagct
gtggacaagaatcttatccgtggaagaagtattgaaggtgttgccgcagccgctctttat
gctgcttgccgccagtgcagcgtcccaagaactcttgatgaaattgaagaggtatccaga
gtaagccggaaagaaatcggaagaacctaccgctttatttccagagaactcgcactgaag
ctcatgcctacgtctcctatcgactatgtcccaaggttctgttcaggccttaaccttaaa
ggagaagtccagtcaaagagcgttgagatccttaggcaggcttccgaaaaggaactcaca
agcggaagaggtccaacaggagttgctgccgctgcaatttatattgcgtccattctctgt
ggtgagcggagaactcagcgggaagttgcggatgtagccggagttactgaagttactatc
cgaaacagatacaaagagcttgcagaagaactggatatagagattattctctaa
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