Micromonospora carbonacea: HXZ27_05280
Help
Entry
HXZ27_05280 CDS
T06722
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mcab
Micromonospora carbonacea
Pathway
mcab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HXZ27_05280 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcab03400
]
HXZ27_05280 (mfd)
Enzymes [BR:
mcab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HXZ27_05280 (mfd)
DNA repair and recombination proteins [BR:
mcab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HXZ27_05280 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
RecG_dom3_C
UB2H
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QLD23697
UniProt:
A0A7H8XFH4
LinkDB
All DBs
Position
1169502..1173182
Genome browser
AA seq
1226 aa
AA seq
DB search
MLTGLFAAALADPGLARARDLARSGAAQVDGLDLTAPAALRPFAVAAVAADPGTAGRGAA
AGPAGGAGRPVLAVTATSREADDLASALGSLLPAEQVAVFPSWETLPHERLSPRSDTVGR
RLAVLRRLAHPDAADAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEPVRLAAGDEADLEEV
ARRLTDMAYARVDLVTKRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQR
TIEAAALLWAPPCRELLLTPAVRRRAAALAAEHPELAEILDKLAEGIPVEGMESLTPALL
GGESLELLLDCMPAGTHVLLCDPERIRTRAHDLVRTSEEFLQASWAAAAVGGQAPVDLGA
AAFRTLADVRAHARALRRPWWTLAPFGLADADAAAPARQPWEDAPTEVDVTPDDAIAVTL
AAQPAPLYHGETDRVAEDLKRWAGDGWSVALVFEGHGPAQRAVEVMRDAGLGARFVEQVP
AAPAPGEVLVTCGGLTGGFVAEAARFVLLTGNDVTGGRGTSTRDMRKLPSRRRNTIDPLE
LKAGDHVVHEQHGIGRYVELVQRTVNGASREYLVIEYAASKRGQPGDRLFVPTDQLDQLS
RYVGGEQPTLHKMGGADWQKSKARARKAVREIAAQLIQLYAARKASRGHAFAPDSPWQRE
LEDAFPWQETPDQLAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQV
AVLVPTTLLVQQHYNTFAERMSQFPVQIRQLSRFQTPKESERTLEMVADGTVDIVIGTHR
LLQTATRFKSLGLVIVDEEQRFGVEHKEHLKTLRASVDVLSMSATPIPRTLEMAITGIRE
MSTIATPPEERHPVLTFVGAHDERQVAASIHRELLRDGQVFYLHNRVESIEKAARRIREL
VPEARVAVAHGQMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLG
LAQLHQIRGRVGRGRERAYAYFLYPPEKPLTEHAHERLATIAQHTELGAGMYVAMKDLEI
RGAGNLLGGEQSGHIEGVGFDLYVRMVGEAVQAFKGERPEEETDVKIDLPVDAHLPHDYV
GVERLRLEMYRKLAEARDADRLREVVAEMTDRYGEPPAPVQNLVAVARFRLLARRYGLTD
VSMQGRHLRFGPLPLPDSKQLRLKRYHPDSVYKSALDQVSVPRPSTRRVGGEPLRDQALL
EWCAQLLKDVLGDPAPVAQPAGAGAR
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
ttgctcaccggactcttcgccgccgccctggccgaccccgggctggcccgggcgcgtgac
ctggcccgctccggtgccgcgcaggtcgacgggctggacctgaccgcaccggcggcgctg
cgcccgttcgccgtcgccgccgtcgccgccgacccgggaaccgccggtcggggagccgcc
gccgggcccgccggaggtgcggggcggcccgtgctcgcggtgaccgccaccagccgggag
gccgacgacctggcctcggcgctgggcagcctgctcccggccgagcaggtcgccgtcttc
ccgtcctgggagacgctgccgcacgagcggctctcgccccgctccgacacggtcggccgc
cgcctggccgtgctgcgccggctcgcgcaccccgacgccgccgacgcgcacgggcgcacc
gggccgctgcgggtggtcgtcgcgccggtgcggtccctgctccagccgcagctcaagggc
ctcggcgacctggagccggtgcggctggccgccggcgacgaggccgacctcgaagaggtc
gcgcgccggctcaccgacatggcgtacgcccgggtcgacctggtcaccaagcgcggcgag
ttcgccgtgcgcggcggcatcctcgacgtcttcccgcccaccgacgagcacccgtcccgg
gtcgagttctggggcgacgaggtggaggagatccgcaccttcgccgtggccgaccagcgc
accatcgaggccgccgcgctgctgtgggccccgccctgccgggagctgctgctcaccccg
gccgtgcggcggcgggccgccgccctggccgccgagcaccccgagctggccgagatcctc
gacaagctggccgagggcattcccgtggaggggatggagtcgctgaccccggcgctgctc
ggcggcgagagcctggagctgctgctcgactgcatgccggccggcacccacgtgctgctc
tgcgacccggagcgcatccgcacccgggcgcacgacctggtgcgcacctccgaggagttc
ctccaggcgagctgggccgcggcggccgtcgggggccaggccccggtcgacctcggggcc
gccgccttcaggaccctggccgacgtacgcgcgcacgcccgcgccctgcgccggccctgg
tggaccctcgccccgttcgggctggccgacgccgacgcggcggcccccgcccggcagccc
tgggaggacgcgccgaccgaggtcgacgtcacgcccgacgacgcgatcgcggtgaccctg
gccgcccagccggccccgctctaccacggcgagaccgaccgggtggccgaggacctcaag
cgctgggccggcgacggctggtcggtcgcgttggtcttcgagggccacggccccgcccag
cgggccgtcgaggtgatgcgcgacgccggcctcggcgcccggttcgtcgagcaggtgccg
gccgcgcccgcccccggcgaggtgctggtcacctgcggcggcctcaccggcggcttcgtc
gccgaggcggcgaggttcgtgctgctcaccggcaacgacgtcaccggcggccggggcacc
tcgacgcgcgacatgcgcaagctgcccagccggcggcgcaacaccatcgacccgctggag
ctgaaggccggcgaccacgtggtgcacgagcagcacggcatcggccggtacgtcgagctg
gtgcagcgcaccgtcaacggcgcgtcccgcgaatacctggtcatcgagtacgcggccagc
aagcgcggccagcccggcgaccggctgttcgtccccaccgaccagctcgaccagctctcc
cgctacgtcggcggcgagcagcccaccctgcacaagatgggcggggcggactggcagaag
tccaaggcgcgcgcccgcaaggcggtgcgggagatcgccgcccagctcatccagctctac
gccgcccgcaaggcgtccagggggcacgcgttcgccccggactccccgtggcagcgggag
ctggaggacgcgttcccctggcaggagaccccggaccagctggccgccatcgaggaggtc
aagcgggacatggagcagaccgtcccgatggaccggctgatctgcggcgacgtcgggtac
ggcaagaccgagatcgcggtgcgggcggcgttcaaggcggtgcaggacggcaagcaggtg
gccgtgctggtgcccaccaccctgctcgtgcagcagcactacaacacgttcgccgagcgg
atgagccagttccccgtgcagatccggcagctctcccgcttccagaccccgaaggagtcc
gaacggacgctggagatggtcgccgacggcaccgtcgacatcgtcatcggcacccaccgg
ctgctccagacggcgacccggttcaagtccctcggcctggtcatcgtcgacgaggagcag
cgcttcggcgtcgagcacaaggagcacctgaagacgctgcgcgcctcggtggacgtgctg
agcatgtcggccaccccgatcccgcgcaccctggagatggcgatcaccggcatccgggag
atgtcgacgatcgccaccccgccggaggagcggcacccggtgctcaccttcgtcggcgcg
cacgacgagcggcaggtggccgcgtccatccaccgcgagctgctccgcgacgggcaggtg
ttctacctgcacaaccgggtcgagtcgatcgagaaggcggcgcgcaggatccgggagctg
gtgccggaggcccgggtcgcggtggcgcacggccagatgggcgaggaggccctggagaag
gtcatggtcggcttctgggagaaggagttcgacgtcctggtctgcaccacgatcgtggag
tcgggcatcgacatccccaacgccaacacgctgatcgtggagcgcgccgacctgctgggc
ctggcccagctgcaccagatccggggccgggtgggccggggccgcgagcgggcgtacgcg
tacttcctctacccgccggagaagccgctcaccgagcacgcccacgagcggctggccacc
atcgcccagcacaccgagctgggcgcgggcatgtacgtggcgatgaaggacctggagatc
cggggcgcgggcaacctgctcggcggcgagcagtccggccacatcgagggcgtcggcttc
gacctgtacgtccggatggtcggcgaggcggtgcaggcgttcaagggcgagcgccccgag
gaggagaccgacgtcaagatcgacctcccggtggacgcgcacctgccgcacgactacgtc
ggcgtggagcggctgcgcctggagatgtaccgcaagctcgccgaggcccgcgacgccgac
cggctgcgcgaggtggtcgccgagatgaccgaccgctacggcgagccgcccgccccggtg
cagaacctcgtggcggtcgcgcggttccggctgctggcccgccgctacggcctcaccgac
gtgagcatgcagggcaggcacctccggttcggcccgctgccgctgcccgactccaagcag
ctccggctcaagcgctaccaccccgactcggtctacaagtcggcgctcgaccaggtcagc
gtgccccggccgagcacccgccgggtcggcggcgagccgctgcgcgaccaggcgctgctc
gagtggtgcgcccagcttctcaaggacgtgctgggcgacccggccccggtggcccagccg
gccggggcgggcgcccggtga
DBGET
integrated database retrieval system
