Mus caroli (Ryukyu mouse): 110286750
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Entry
110286750 CDS
T05910
Symbol
Upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03013
Nucleocytoplasmic transport
mcal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110286750 (Upf3b)
03015 mRNA surveillance pathway
110286750 (Upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110286750 (Upf3b)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110286750 (Upf3b)
mRNA cycle factors
P-body specific factors
110286750 (Upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
110286750
NCBI-ProteinID:
XP_021008985
Ensembl:
MGP_CAROLIEiJ_G0032999
UniProt:
A0A6P5P8I6
LinkDB
All DBs
Position
X:complement(30310383..30329595)
Genome browser
AA seq
485 aa
AA seq
DB search
MKEEKDQRPKEKRVTLFTPQGATGGCIGATAEGAKGDDRQDRNRDKKEALSKVVIRRLPP
TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDILLFRDRFDGYVFL
DNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRKFLESYATDNEKMTSTPET
LLEEIEAKNRELIAKRTTPLLSFLKNKQRMREEKREERRRREIERKRQREEERRKWKEEE
KRKRKDIEKLKKIERIPEREKIRDEPKIKVHRFLLQAVNQKNLLRKPEKGDEKELDKRDK
TKRLDKENLNEERASGHSYTLPRRSDVELKDEKPKRLDDEGVRDYRDRDREYERDQERMI
RERERLKRQEEERRRQQQKERYEKEKAFKRKEEEMKREKETLRDKGKKSENTESICSLEK
IEKKEEVVKRDRIRNKDRPAMQLYQPGARSRSRLCPADDSIKPGDSPVDKKQESGISHRK
EGGEE
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagaaaaagatcaaaggcctaaggagaaacgagtgaccctgtttacgccgcag
ggcgccacaggcggctgtataggcgctactgctgaaggcgccaaaggggacgataggcag
gatcgcaacagggacaagaaagaagctttgagcaaggtggtaattcgaagattacctccc
actttgaccaaggaacagcttcaggaacatcttcaacctatgcctgagcacgattatttt
gagtttttttctaatgatactagcctttatcctcatatgtatgccagagcatatatcaac
tttaaaaaccaagaagacattcttttattcagggaccggtttgatggctatgtattcctt
gacaataagggtcaagaatatcatgctatagtagaatttgcaccatttcaaaaagctgca
aaaaagaagattaagaaaagagatacaaaagttgggactatcgaggatgatccagaatac
agaaaatttttggagagttatgccacagacaatgagaaaatgacatctactccagagaca
ttgctggaggaaattgaagctaaaaatcgagaattaatagctaaaaggacaacgcccctt
ttgagcttcctgaagaacaagcagagaatgagagaagaaaagagagaagaaaggaggaga
cgggaaatagagaggaaaaggcaaagagaagaagagagaagaaaatggaaagaagaggag
aaacgaaaaagaaaagatatagaaaaactaaagaagatagaaagaattccagaaagggag
aaaataagggatgaaccaaagattaaggtacacaggtttctgttacaagctgtgaatcag
aaaaatttgctcaggaaaccagaaaaaggagatgaaaaagaacttgataaaagagacaaa
accaagagactggacaaagaaaatctgaatgaagaaagagccagtgggcacagttacact
ctgcccaggcgttctgatgtcgaactgaaggatgaaaagccaaagaggctcgatgacgag
ggtgtcagagattacagagacagggaccgggagtatgagagagatcaggagcgcatgatc
cgagaaagagagaggctgaagcggcaagaagaagagcgccggcggcagcagcagaaagaa
cgctatgagaaagagaaggcttttaagcgaaaggaagaagaaatgaagagagagaaagag
acacttcgagataaaggaaagaagagtgagaatacagaatcaatatgctcattagaaaaa
attgaaaaaaaagaggaagtggttaagagagaccgcataaggaacaaggatcgtccagcc
atgcagctttaccaaccaggagctcgaagccgaagccgactctgtcccgccgatgacagc
atcaagcctggagattccccagtggacaaaaagcaggaaagtggtattagccatagaaaa
gaaggaggagaggagtga
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