Mus caroli (Ryukyu mouse): 110291230
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Entry
110291230 CDS
T05910
Symbol
Usp13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
mcal01002
]
110291230 (Usp13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mcal04121
]
110291230 (Usp13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mcal04147
]
110291230 (Usp13)
Enzymes [BR:
mcal01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
110291230 (Usp13)
Peptidases and inhibitors [BR:
mcal01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
110291230 (Usp13)
Ubiquitin system [BR:
mcal04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
110291230 (Usp13)
Exosome [BR:
mcal04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
110291230 (Usp13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP_var
UBA
zf-UBP
UCH_1
UBA_4
Motif
Other DBs
NCBI-GeneID:
110291230
NCBI-ProteinID:
XP_021013905
Ensembl:
MGP_CAROLIEiJ_G0024923
UniProt:
A0A6P5PG92
LinkDB
All DBs
Position
3:27808007..27917881
Genome browser
AA seq
858 aa
AA seq
DB search
MQRRGALFSVPGGGGKMAAGDLGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEGGL
YVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHMREKVRGASGGALPKRRNSKIFLDLDM
DDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTW
ENEVPVSKYANNLVQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGN
GHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEGPVSDPHLAKHLAHFGIDMLHTQGTE
NGLRDNDIKPRVSEWEVIQESGTKLKPMYGPGYTGLRNLGNSCYLSSVMQAIFSIPEFQR
AYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQN
GISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEERIQ
CCQTRKVRYTERVDYLMQLPVAMEAATNKDELITYELMRREAEANRRPLPELVRAKIPFS
ACLQAFAEPDNVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPRKFDVS
IDMPDLLDISHLRARGLQPEEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQLA
EMGFPLEACRKAVYFTGNTGAEVAFNWIIVHMEEPDFAEPLAIPGYGGAGASVFGATGLD
NQPPEEIVAIITSMGFQRNQAVQALQATNHNLERALDWIFSHPEFEEDSDFVIEMENNAN
ANIVSEAKPEGPRVKDGSGMYELFAFISHMGTSTMSGHYVCHIKKEGRWVIYNDHKVCAS
ERPPKDLGYMYFYRRIPS
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccggggtgccctgttcagcgtgccgggcggcggcgggaagatggctgcaggg
gacctgggcgagctgctggtgcctcatatgcccacgatccgcgtgcccaggtctggggac
cgcgtctacaagaacgagtgcgccttctcctacgactccccgaactctgaaggtgggctc
tacgtatgcatgaatacctttttggcctttggaagggaacacgtagaaagacactttcga
aaaactggacagagcgtatacatgcacctgaagaggcacatgcgagagaaggtaagagga
gcctccggtggagctttacccaaaaggaggaattccaagatatttttagatctagatatg
gatgacgatttaaatagtgacgattacgaatatgaagacgaagccaaacttgttatattc
ccagaccactatgaaatagcccttcctaacattgaggagttaccagccctggtaacaatt
gcttgcgatgcagtgctcagctcaaagtccccttacaggaagcaggatccagacacatgg
gaaaatgaagtgccagtatcgaagtatgccaacaaccttgtgcaactggacaatggggtc
aggattcctcccagtggctggaagtgtgcccgatgtgacctgcgggagaacctctggttg
aatctgactgacggctctgttctgtgtgggaagtggttttttgacagctcagggggcaac
ggccacgcactggagcattacagggacatgggctatcctctggccgtgaagctgggcacc
attacacctgatggggcagatgtttattcttttcaagaagaggggcctgtttcggatcct
catttggccaaacacttagcacattttgggatcgacatgctccacacgcaagggacagag
aacgggctccgggacaatgacatcaagccgagagtcagcgagtgggaagtgatccaggag
tcagggactaagctgaagccgatgtacggcccagggtacacgggcctgaggaatctgggc
aacagttgctacctcagttctgtcatgcaggccatcttcagcatcccagagttccagaga
gcgtatgtaggaaacctcccaaggatatttgactactcaccgttagatccaacgcaggac
ttcaacacacagatgactaagttgggacatggcctcctctctggccagtactcgaagcct
ccagtgaaatctgagctcattgaacaggtgatgaaggaggagcacaagcctcagcagaat
gggatctctccacgcatgttcaaggcctttgtcagcaagagccacccggaattctcctcc
aacaggcagcaggatgcccaggagtttttcttgcatttggtcaatctggtagagaggaat
cgcattggctcagaaaacccaagtgatgttttccggtttttggtggaggagcgaattcaa
tgctgtcagaccagaaaggttcgctacacggagagggtggactacctaatgcagttacct
gtggccatggaggcagcaaccaacaaagatgagctgatcacctatgaactcatgcggagg
gaagcagaagccaacagaagacccctacctgagctggtgcgagccaagatcccattcagt
gcctgccttcaggcctttgctgaacctgacaatgtggatgatttctggagcagcgctctg
caggccaagtctgcaggggtcaaaacttctcgctttgcctcattccctgaatacttggta
gtgcagataaagaagttcacttttggtcttgactgggttcccagaaaatttgatgtttct
attgatatgccagacctactagatatcagccatctcagagccaggggcttgcagccagag
gaagaggagcttcctgacatcagcccccccatagtcattcctgatgactcaaaagaccgc
ttgatgaaccagttgatagacccctcagacattgatgagtcttcggtgatgcagctggct
gagatgggcttccctttggaagcctgcaggaaggctgtgtacttcactgggaacactgga
gctgaggtggccttcaactggattatcgtgcacatggaggagcctgactttgctgaacca
ctggccatacctgggtatggaggggctggggcctctgtctttggtgctactggattggac
aaccaacctcctgaggaaatcgtagctattatcacctcgatgggattccagcgaaatcag
gcagtgcaggctctacaagcaacgaatcataacctggaaagagcactggactggatcttc
agccaccccgagtttgaagaggacagtgactttgtgattgagatggagaacaatgcaaat
gccaacatcgtgtctgaggccaagccagaggggcccagagtgaaggatgggtctggaatg
tacgagttgtttgcattcatcagtcacatgggaacatctacaatgagtggccattatgtt
tgccatatcaagaaggagggacgatgggtgatctacaatgaccacaaagtttgtgcctca
gaaaggccccccaaagacctgggctatatgtacttttaccgcaggataccaagctaa
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