Mus caroli (Ryukyu mouse): 110295887
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Entry
110295887 CDS
T05910
Symbol
Sox5
Name
(RefSeq) transcription factor SOX-5 isoform X9
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcal03000
]
110295887 (Sox5)
Transcription factors [BR:
mcal03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
110295887 (Sox5)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
MPS2
Motif
Other DBs
NCBI-GeneID:
110295887
NCBI-ProteinID:
XP_021019919
Ensembl:
MGP_CAROLIEiJ_G0029042
UniProt:
A0A6P5PVZ5
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Position
6:complement(141637391..142575746)
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AA seq
679 aa
AA seq
DB search
MLTDPDLPQEFERMSSKRPASPYGETDGEVAMVTSRQKVEEEESERLPAFHLPLHEVDGN
KVMSSLAPYNSSTSPQKAEEGGRQSGESVSSAALGTPERRKGSLADVVDTLKQRKMEELI
KNEPEDTPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQ
LLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQVQGQL
PPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGP
LQLQDEVAQPLNLSAKPKTSDGKSPASPTSPHMPALRINSGAGPLKASVPAALASPSARV
STIGYLNDHDAVTKAIQEARQMKEQLRREQQALDGKVAVVNSIGLSNCRTEKEKTTLESL
TQQLAVKQNEEGKFSHGMMDFNMSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFM
VWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYK
YKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMA
GMPSPHLPSEHSSVSSSPEPGMPVIQSTYGTKGEEPHIKEEIQAEDINGEIYEEYDEEEE
DPDVDYGSDSENHIAGQAN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgcttactgaccctgatttacctcaggagtttgaaaggatgtcttccaagcgaccagcc
tctccgtatggggagacagatggagaggtagccatggtgacaagcagacagaaagtggaa
gaggaggagagtgagaggctcccagcctttcaccttcccttacatgaagtcgatggcaat
aaagttatgtcttcattagctccatacaactcatctacctcacctcagaaggcagaagaa
ggtgggcgacagagtggcgagtccgtgtcgagtgcagccctggggactcccgagcggcgc
aagggcagcttagcggatgtggtggacaccctgaagcagaggaagatggaagagctgatc
aagaatgagccagaagacactcccagtattgaaaagctactctccaaggactggaaagac
aagctcctggcaatgggatcagggaactttggagaaataaaagggactcctgagagcctc
gctgagaaggagcggcagctcatgggtatgatcaatcagctgaccagtctacgggagcaa
ctcctggctgcccacgatgagcagaagaagttggctgcatctcagatagagaaacagcgt
cagcagatggagctggccaagcagcaacaggagcagatcgcgaggcaacagcagcagctt
ctgcagcaacaacacaaaatcaacttgcttcagcaacagatccaggttcaaggtcagctg
ccgccattgatgattcccgtgttccctcctgaccagcggaccctcgcagcagctgcccag
caaggattcctccttcctcctggtttcagctacaaggctgggtgcagtgacccttaccct
gttcagctgatcccaaccaccatggcagctgccgctgcagcaacaccaggcttaggccca
ctccagctgcaggatgaagtggcccagccactgaacctatcagctaagcccaagacctct
gatggcaaatcacctgcatcgcccacctctcctcacatgccagctctgagaataaacagt
ggggctggccccctcaaagcctctgtcccagcagcgttagctagtccttctgcaagagtt
agcacaataggctatttaaatgaccacgatgctgtcaccaaggcaatccaagaagctcgc
cagatgaaagagcaactcaggcgagagcagcaagcgttggacgggaaggtggccgtggtg
aacagcataggtctcagcaactgccggacagaaaaggaaaaaacaacactggagagcctg
actcagcagttggcagttaaacagaatgaagaagggaaatttagccatggaatgatggat
ttcaatatgagtggagattctgacggaagcgctggagtctcagagtcaagaatttacagg
gaatccaggggacgtggaagcaacgagccccacataaagcgtccaatgaatgccttcatg
gtgtgggcgaaagatgaacggaggaaaatccttcaggcctttcccgacatgcacaattcc
aacatcagcaagatactgggatctcgctggaaagctatgaccaacctagagaaacagcca
tactatgaggagcaggcccgcctcagcaagcagcacctggagaagtacccggactacaag
tacaagcctcggccaaagcgcacctgtctggtggacggcaagaaactgcgtatcggggag
tacaaggccatcatgcggaaccggaggcaggaaatgcgacagtacttcaacgttgggcaa
caagcacagatccccatcgcgacggccggcgttgtgtaccccggcgccatcgccatggcc
ggaatgccgtcccctcacctgccctccgagcactcgagcgtgtccagcagcccggagccc
gggatgcccgtgatccagagcacttatggcacgaagggagaggagccccacatcaaggaa
gagatccaggctgaggacatcaacggagagatttacgaggagtacgatgaggaggaggag
gacccggatgtggattatgggagtgacagcgaaaaccacattgcgggacaagccaactga
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