Mus caroli (Ryukyu mouse): 110300617
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Entry
110300617 CDS
T05910
Symbol
Upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03013
Nucleocytoplasmic transport
mcal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110300617 (Upf3a)
03015 mRNA surveillance pathway
110300617 (Upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110300617 (Upf3a)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110300617 (Upf3a)
mRNA cycle factors
P-body specific factors
110300617 (Upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
110300617
NCBI-ProteinID:
XP_021026525
Ensembl:
MGP_CAROLIEiJ_G0030848
UniProt:
A0A6P5Q936
LinkDB
All DBs
Position
8:10238545..10251895
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AA seq
411 aa
AA seq
DB search
MRSEEGAGGLGAALAARGPSWREKLSSSETHCRRESPRKESAAPPAPTLSESGPGKPREE
KRTALSKVVLRRLPPGLTKEQLEEQLRPLPAHDYFEVVAADLSLYPHVYSRAYINFRNPD
DILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKQFLE
SYSLEEEKTSASPETLLGEIEAKTRELLARRTTPLLEYIKNRKLEKQRLREEKREERRRR
ELEKKRLREEEKRKRREEDRCKRKEAEKHKRAEKDVRIKLLKKLETGEEVTTEKPKERGE
EVVASQPETAGERLQDASDKEPRDKRSREKDPETSRCHPDTCRKHSSHSEFARFSRRNED
EAKWGKGFAQDRGKKGQDGSVPVDVAERSSKEHKEYDSLGPRKDRLGHKAQ
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcggaagagggggccggaggcttgggcgcagccctggctgcgcggggcccgagc
tggagggagaaactatcgagctcagagacccactgccgccgcgaatcgccgcggaaggag
tctgcggcgccgcccgccccgaccctaagtgagagcgggcccggcaagcctcgcgaggag
aagaggacggccctgagcaaggtggtcctccggcgtctgcccccgggcctcaccaaagag
cagctggaagagcaactgcgccccctgccggcgcacgattacttcgaggtggtggctgcg
gacctcagcctttatcctcatgtctactccagagcatacattaattttaggaaccctgat
gacatcctgctgttcagagaccgttttgacggctatatcttcattggcaataaaggcctg
gagtatcctgctgtggtggagtttgctccattccagaagatcgccaaaaagaagctgaag
aaaaaagatgccaagactggaagcattgaagatgacccagagtataaacagttcctcgag
tcgtacagcctggaggaggagaaaaccagcgctagtcccgagacgctgctgggagagata
gaagccaagacgagagagctcctggccagaaggaccacccctcttttggaatatattaaa
aatagaaaattagaaaagcagagactccgggaagaaaaacgcgaggagcggaggaggagg
gagctagaaaagaagcgtctgcgggaagaagagaaaaggaagaggagagaagaggaccgc
tgtaagaggaaggaggcggagaagcacaagagagcggagaaggatgtgaggatcaagctt
cttaaaaaactggaaacgggagaagaagtgaccacagagaaacccaaagaaagaggtgaa
gaggtggtagcgagccagccggagacagctggggagaggcttcaggatgccagtgataaa
gagccaagggacaagagatctcgagagaaagacccggaaacttcaagatgtcatccggac
acctgcaggaagcacagcagtcattcagagtttgccaggttctccagaaggaatgaagac
gaggcaaagtgggggaaaggcttcgcccaggacagagggaagaagggccaggatggcagt
gtccccgtggacgtggcagagagaagcagcaaggaacacaaggagtatgacagcctgggg
ccaagaaaggatcgcctgggacacaaggcccagtag
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