Mus caroli (Ryukyu mouse): 110303003
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Entry
110303003 CDS
T05910
Symbol
Smarcb1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03082
ATP-dependent chromatin remodeling
mcal03250
Viral life cycle - HIV-1
mcal04714
Thermogenesis
mcal05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110303003 (Smarcb1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
110303003 (Smarcb1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
110303003 (Smarcb1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
110303003 (Smarcb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mcal01009
]
110303003 (Smarcb1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcal03021
]
110303003 (Smarcb1)
03036 Chromosome and associated proteins [BR:
mcal03036
]
110303003 (Smarcb1)
Protein phosphatases and associated proteins [BR:
mcal01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
110303003 (Smarcb1)
Transcription machinery [BR:
mcal03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110303003 (Smarcb1)
SWI/SNF complex
110303003 (Smarcb1)
Chromosome and associated proteins [BR:
mcal03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110303003 (Smarcb1)
PBAF complex
110303003 (Smarcb1)
SWI/SNF complex
110303003 (Smarcb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
110303003
NCBI-ProteinID:
XP_021029542
Ensembl:
MGP_CAROLIEiJ_G0015455
UniProt:
A0A6P5QGL7
LinkDB
All DBs
Position
10:complement(69931470..69955645)
Genome browser
AA seq
385 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
MEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgttgagcaagaccttcgggcagaagcccgtcaagtttcagctggag
gacgacggggagttctacatgatcggctccgaggtgggaaactacctgcgtatgttccga
ggttctctgtacaagagatacccctcactctggcggcgactagccactgtggaagaaagg
aagaaaatagtggcatcgtcacatggtaaaaaaacaaaacctaacactaaggatcatggc
tataccaccctggccaccagcgtgacgctcctgaaagcctcagaggtagaagagatcctg
gatggcaatgatgagaagtacaaggctgtgtccatcagcacagagcccccgacctacctc
agggagcagaaggccaagaggaacagccagtgggtccccaccctgcccaacagctcccac
cacctggatgctgtgccgtgttccaccaccatcaacaggaaccgcatgggtcgggacaag
aagagaaccttccccttgtgctttgatgaccacgacccagctgtgatccatgagaatgca
tcacagcctgaggtgctggtgcccattcggctcgacatggagattgacgggcagaagctg
cgagacgcttttacctggaacatgaacgagaagctaatgactcctgagatgttttcagaa
atactttgtgatgatctggatttgaatccactgacttttgtgccagctattgcctctgcc
attcgacagcagattgagtcctaccccacagacagcatcctagaggatcaatccgaccag
cgtgtcatcatcaagctgaacatccacgtggggaacatctccctggtggaccagtttgag
tgggacatgtcagagaaagagaactccccagagaagtttgccctgaagctgtgctcggag
ctgggcttgggcggggagtttgtcaccaccattgcatacagcatccgaggacagctgagc
tggcaccagaagacctatgccttcagtgagaacccacttcccacagtggagattgccatt
cgaaatactggagatgctgaccagtggtgccccctgctggagacactgactgatgcagag
atggagaagaagatccgggatcaagataggaacacaaggcgaatgaggcgtcttgcaaac
actgccccagcctggtga
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