Microbacterium caowuchunii: F6J84_05070
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Entry
F6J84_05070 CDS
T07216
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mcaw
Microbacterium caowuchunii
Pathway
mcaw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F6J84_05070 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcaw03400
]
F6J84_05070 (mfd)
Enzymes [BR:
mcaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F6J84_05070 (mfd)
DNA repair and recombination proteins [BR:
mcaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F6J84_05070 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
TRCF
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QEW01436
UniProt:
A0A5J6KVX6
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All DBs
Position
1074259..1077837
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AA seq
1192 aa
AA seq
DB search
MRALTQAETFRDAVATASDDGDFSLVDGLDAPLLAALLEKRREAGAPAALLVIVPTGRRA
ESIGPALQAVLPGADVRHFPAWETLPHERLSPSAETVGRRLDVLRRIADWEGEAPLVVTA
SVRSAIQPLAPGLADTAAVRLAVGARGHDLADIVTKLVERAYLRVDMVSRRGEFAVRGGI
LDVFPPTADHPYRVEFFGDEIDQIRAFSVADQRSLPGEIPEVEFVASRELLLTDAVRERA
RGLGDAFPSLRGMLEKMAEGIPAEGMESLTPALIDDLVTLVDYLPRGTAVALVDPERAAA
RARTLADTNREFLDAAWSAAVAGADTPVDLGAGDFVSLPRLQEVTHENGGVWWTLSGFDS
GAADAEVEGLTDSGGVVRLEAGSVPSFAGNVDGAIAHVGSRVADGWSVVIAASGVGLADR
ARDVLGEHGIAARRVDTILEAPEPRVAMIVTSELERGFEVEGAKLAVLTESEFYGRTIAN
DSRAVKKLASRRRNVVDPLQLKAGDYVVHQTHGIGRFVELVQREVSSGGRNPVKSQREYL
VLEYAPSKRGHPGDKLFVPTDQLDLLSRYVGGEAPTLSKMGGSDWATAKSKARKAVRDIA
VELVKLYSARMASKGHAFGPDTPWQRELEEAFPFAETPDQLQTIDEIKADMEKPIPMDRL
LSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHTETFTERFAGFPVKVRALSR
FQTDKQAREVVAGLADGTVDMVIGTHRILTEKIIFKDLGLLIIDEEQRFGVEHKDALKKL
KTNVDILAMSATPIPRTLEMAVTGIREMSTLQTPPEDRHPILSYVGPRNDKQIAAAIRRE
LLREGQVFYVHNRVQSIQRVAAHLAELVPEARIAVAHGQMGEHQLEKVVDDFWERRADVL
VSTTIIETGLDIANANTIIIDRADKYGLSQLHQLRGRVGRARERAYAYFLYDENKPLSET
AADRLETIAVNNDLGSGMQVALKDLELRGAGNLLGGEQAGHIAGVGFDLYLRMVGEAVAT
FRGEDTEGPTELRLELPVQARIPETYIDSERLRLEAYQKLSAAASATAKDDALDLVIEEL
SDRYGALPSEVEGLVAVARLRRRAARSGLTDVVAMGPNLRIAPAKLPDSMRVRLQRLYPK
SKLVASGEAVVVPLPTADGTVLADGDLIAWTAQLLDQIFPVAEKSEPAVLQG
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcgccctcacgcaggcggaaaccttccgggatgcggtggcgaccgcatccgatgac
ggggatttctccctcgtcgacgggctcgatgcacccctgctggcggcgctgctcgagaag
cgccgcgaggccggtgcccccgccgctctgctcgtgatcgtgccgaccggccggcgcgcc
gaatccatcggtcccgccctgcaggcggtgctccccggtgccgacgtgcggcacttcccc
gcgtgggagaccctgccgcacgagcgcctcagtccgagtgcggagacggtcgggcgacgg
ctcgacgtcctccgccggatcgcggactgggagggcgaggcgccgctcgtggtcaccgca
tcggtgcgcagcgccatccagcccctggcgccgggtctcgccgacaccgccgccgtccgc
ctggcggtcggtgcgcgcggacacgacctcgccgacatcgtgaccaagctcgtcgagcgc
gcgtacctgcgggtggacatggtctcccggcgcggcgagttcgccgtgcgcggcggcatc
ctcgacgtcttcccgcccacggcggaccacccctaccgcgtcgagttcttcggggacgag
atcgaccagatccgtgcgttctcggtcgccgaccagcgctcgctgccgggcgagatcccg
gaggtcgagttcgtcgcgagccgggagctcctcctcaccgacgccgtgcgcgagcgtgcc
cggggactcggtgacgcgttcccgtccctgcgcggcatgctcgagaagatggccgagggc
atccccgccgagggcatggaatcgctcacccccgccctgatcgacgacctcgtcaccctc
gtggactacctgccgcgcgggacggcggtggccctcgtcgatccggagcgtgccgcggcc
cgtgcccgcaccctcgcggacacgaatcgggagttcctcgacgccgcctggagcgccgcc
gtcgcaggagcggacaccccggtcgacctcggtgccggcgacttcgtgagcctgccccgt
ctgcaggaggtgacccacgagaacggcggtgtctggtggacgctgtccggtttcgactcc
ggcgcggcggacgccgaggtggagggtctcaccgacagcgggggcgtggtccggctcgag
gccggctccgtcccgtcgttcgcggggaacgtggacggcgcgatcgcgcacgtcggctcg
cgcgtcgcggacggatggtccgtggtgatcgccgcatccggcgtcgggctcgccgatcgg
gcgcgcgacgtgctcggcgagcacgggatcgcggcccggcgcgtcgacaccatcctcgag
gccccggaaccgcgtgtggcgatgatcgtcacgagtgagctggaacgcggcttcgaggtc
gagggcgcgaagctcgccgtcctcaccgagtcggagttctacggtcgcaccatcgcgaac
gattcccgggccgtgaagaagctcgcctcccggcgccgcaacgtcgtcgacccgctgcag
ctgaaggccggcgactacgtggtgcaccagacgcacggcatcggccggttcgtcgagctc
gtgcagcgcgaggtttcctcgggcgggcgcaatccggtcaagagccagcgcgagtacctc
gtgctggagtacgcgccctccaaacgcggtcatcccggtgacaagctcttcgtgccgacc
gaccagctcgacctcctctcgcggtacgtgggcggagaagcgccgacgctctcgaagatg
ggcggcagcgactgggccacggcgaagagcaaggcgcgcaaggcggtgcgcgacatcgcg
gtcgagctcgtcaagctgtattccgcgcggatggcgtccaagggccacgccttcggcccg
gacaccccctggcagcgcgagctggaggaggcgttcccgttcgccgagacgccggatcag
ctgcagacgatcgacgagatcaaggccgacatggagaagccgatcccgatggaccggctg
ctgtccggtgatgtcggcttcgggaagaccgaggtcgcggtccgggcggcgttcaaggcc
atccaggacggcaagcaggtcgcgatgctcgtcccgaccaccctgctggtcaagcagcac
accgagacgttcaccgagcggttcgccggcttcccggtgaaggtgcgcgccctgtcccgc
ttccagaccgacaagcaggcccgcgaggtcgtcgcggggctggccgacggcacggtcgac
atggtgatcgggacccaccgcatcctcaccgagaagatcatcttcaaggacctcggactg
ctcatcatcgacgaggagcagcggttcggcgtcgagcacaaggacgccctgaagaagctc
aagacgaacgtcgacatcctcgcgatgagcgcgacgccgatcccgcgcacgctggagatg
gccgtgaccggtatccgcgagatgtccacgctgcagaccccgcccgaggacaggcatccg
atcctgtcgtacgtcggcccccgcaacgacaagcagatcgcggccgccatccgtcgcgag
ctgctgcgcgaggggcaggtcttctacgtgcacaaccgtgtccagtcgatccagcgggtc
gccgcgcacctggcggaactcgtgcccgaggcgcgcatcgccgtggcgcacggacagatg
ggcgagcaccagctcgagaaggtcgtggacgacttctgggagcgccgtgccgacgtgctc
gtctcgaccaccatcatcgagaccggtctcgacatcgcgaacgccaacacgatcatcatc
gaccgggccgacaagtacggcctgagccagctgcaccagctgcgcgggcgcgtcggccgc
gcgcgggagcgggcctacgcgtacttcctctacgacgagaacaagccgctcagtgagacc
gccgccgaccggctcgagacgatcgccgtcaacaacgacctcggatccgggatgcaggtg
gccctgaaggacctcgagctgcgcggtgcggggaacctgctcgggggcgagcaggccggc
cacatcgccggcgtcgggttcgacctgtacctgcggatggtgggggaggcggtcgcgacc
ttccgcggcgaggacaccgagggacccaccgagctccgactcgagctgccggtccaggcg
cgcatcccggagacctacatcgacagcgagcggctgcggctggaggcgtatcagaagctc
tccgccgcggcatccgccacggctaaggacgacgccctggacctcgtgatcgaggagctg
agcgaccggtacggagcgcttccgtccgaggtggaagggctcgtcgcggtcgcccggctg
cggcgccgtgccgctcggtcggggctcacggatgtggtggcgatggggcccaacctgcgg
atcgcgccggccaagctgccggactcgatgcgggtgcggttgcagcgcctgtacccgaag
tcgaagctcgtggcgtccggcgaggccgtcgtcgtgccgctgccgacggcggacggtacg
gtgctcgcggacggcgacctgatcgcctggacggcgcagttgctcgaccagatcttcccg
gtcgccgagaagagcgagcccgcggtcctgcagggctga
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