Microbacterium caowuchunii: F6J84_05925
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Entry
F6J84_05925 CDS
T07216
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mcaw
Microbacterium caowuchunii
Pathway
mcaw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mcaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
F6J84_05925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcaw03400
]
F6J84_05925
Enzymes [BR:
mcaw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
F6J84_05925
DNA repair and recombination proteins [BR:
mcaw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
F6J84_05925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QEW01458
UniProt:
A0A5J6KUR3
LinkDB
All DBs
Position
complement(1254886..1257336)
Genome browser
AA seq
816 aa
AA seq
DB search
MAQEQQTVTVGGRRIRLSRLDKILYPVTGTTKAEVVDYYVRIAPLMLPHLEGRPVTRKRW
PDGVGDAAHPGSSFFAKDLESSAPEWVRRTGIEHSTGTKSYPLVEDVPTLVWLAQTASLE
LHTPQWRFTADALPGPPDRLVLDLDPGEGVDLAACAEVARWARRTLEDIGMPPLPVTSGS
KGIHLYSPVPAGQTSDSVSALARELARSLEADHPDLVVSAMSKAARPGKVFVDWSQNNGK
KTTIAPYSLRGRERPTVAAPRTWDELDSPELAQLEFTAVLERAERMGDPLSALGFRGGER
VAERAPLRTYLAKRSADRTPEPVPDHPHADPWPPGGAPRFVIQEHHARRLHYDLRLERDG
VFVSWAVPKGVPASASRNHLAVMTEDHPLSYGGFEGTIPRGEYGAGTVTIWDDGSYELEK
WRDDEIIFTLAGRPDGPLGRARLALIRTDGEGEKSSWLLHRMKTADGEPPARDSAAAPPP
ATAPASDPDSRLTPARLRPMLAENASPALARSSARRWSAQWAEIKWDGIRALGFWDGARL
LLRARSGTDITARYPEVTGAATFLGDAPAVVDGEIVAFDAEGRPSFTLLQNRMHLTRAAE
IRVQAERVPVRFAVFDLLSSSGADLTSRPLRERRALLEERLADASGPFTVPPAFDDVDAA
LRASAAFDLEGVVVKNPDSTYRPGQRSGDWLKVKHIRTQEIVIGGIRPGRGGRSGTIGSL
LMGIPGPDGLRYVGRVGSGFDERTLRRLDELLAPLRSDSTPFMDVPDADASDADWVRPEL
VGEVAFAETTPDGRLRHARWRGLRPDKSPAEVRPEE
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggagcagcagaccgtgacggtcgggggacgccgcatccgcctcagtcgcctc
gacaagatcctgtatccggtgaccgggaccaccaaggcggaggtcgtggactattacgtc
cgcatcgccccgctcatgctcccccacctggagggtcgtccggtgacccgtaaacgctgg
ccggacggtgtcggcgacgccgcgcatccgggatcgtcgttcttcgcaaaggatctcgag
agcagcgcacccgagtgggtgcgccggacggggatcgagcattccaccgggacgaagtcc
tatcccctcgtcgaggatgtgccgacgctggtctggctcgcccagaccgcgagcctcgag
ctgcacacgccgcaatggcggttcaccgcggacgccctgcccggcccgcccgaccgtctc
gtcctggatctcgaccccggggagggcgtcgacctcgccgcgtgcgcggaggtcgcgcgc
tgggcccgccgcacgctcgaggacatcgggatgccgccgctcccggtcaccagcggcagc
aaaggcatccacctgtacagcccggtcccggccgggcagacgagcgattccgtgtcggcg
ctggcccgggagctcgcccgctcgctcgaagccgaccaccccgacctcgtggtcagtgcc
atgtcgaaggcggcccggcccggcaaggtgttcgtcgactggagccagaacaacggcaag
aagacgacgatcgccccgtactccctgcgcggacgcgagcgtccgaccgtcgccgcgccc
cgcacctgggacgagctcgactcccccgagctggcccagctcgagttcaccgcggtgctc
gagcgcgcggagcgcatgggcgacccgctgtcggcgctgggattccggggcggagagcgg
gtcgcggagcgcgcaccgttgcgcacctacctcgccaagcgctccgccgaccgcaccccc
gagcccgtccccgaccatccgcatgccgatccgtggccaccgggcggcgcgccgcgcttc
gtcatccaggagcaccacgcccggcggctgcactacgacctgcgccttgagcgcgacggg
gtgttcgtcagctgggccgtgcccaagggcgtcccggcgtcggcgagccgcaaccacctc
gcggtgatgaccgaggaccaccccctctcctacggcggcttcgagggcaccatcccgcgc
ggcgagtacggggccggcacggtcaccatctgggacgacggctcctacgagctcgagaaa
tggcgcgacgacgagatcatcttcaccctcgccgggcgcccggacgggccgctcgggcga
gcccgtctggccctcatccgcaccgacggcgagggcgagaaatccagctggctgctgcac
cgcatgaagacggcggatggggagccgcccgcacgggacagcgccgccgccccgccaccg
gcgacggcgcccgcatccgatccggactcacgcctcacccccgcccggctgcgccccatg
ctcgccgagaacgcctcgcccgcgctcgcgcgcagcagcgcgcgacggtggtcggctcag
tgggcggagatcaagtgggacggcatccgtgccctcgggttctgggacggtgcccggctc
ctcctgcgcgcccgcagcggtaccgacatcaccgcccgctatccggaggtgaccggcgcc
gccacgttcctcggcgacgcgccggccgtcgtcgacggcgagatcgtcgccttcgatgcc
gagggccgaccgagtttcaccctcctgcagaacaggatgcacctcacccgcgccgccgag
atccgcgtgcaagcggagcgcgtccccgtccgcttcgcggtcttcgacctgctctcctcg
tccggtgccgacctcaccagccgtccgctccgggagcgacgcgccctgctcgaggagcgc
ctggcggatgcgtccggccctttcacggtgccgcccgcattcgacgacgtggatgcggcg
ctgcgcgccagcgccgcgttcgatctggagggcgtcgtcgtcaagaacccggacagcacc
taccgccccggccagcgcagcggcgactggctcaaggtcaagcacatccgcacgcaggag
atcgtgatcggcgggatccgccccggccgaggcggccgttccggcacgatcgggtccctc
ctcatgggcatccccggccccgacggcctgcgctacgtcgggcgggtgggctcgggcttc
gacgagcgcaccctccgccggctggacgagctgctcgcaccactgcgcagcgacagcaca
ccgttcatggacgtcccggatgcggacgcatcggacgcggactgggtgcgccccgaactc
gtgggcgaggtcgccttcgccgagacgacccccgacggccggctgcgtcacgcgcgctgg
cggggactacgcccggacaagtcgcccgccgaggtgcgtcccgaggagtga
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