KEGG   Microbacterium caowuchunii: F6J84_05925
Entry
F6J84_05925       CDS       T07216                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mcaw  Microbacterium caowuchunii
Pathway
mcaw03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mcaw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    F6J84_05925
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mcaw03400]
    F6J84_05925
Enzymes [BR:mcaw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     F6J84_05925
DNA repair and recombination proteins [BR:mcaw03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     F6J84_05925
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QEW01458
UniProt: A0A5J6KUR3
LinkDB
Position
complement(1254886..1257336)
AA seq 816 aa
MAQEQQTVTVGGRRIRLSRLDKILYPVTGTTKAEVVDYYVRIAPLMLPHLEGRPVTRKRW
PDGVGDAAHPGSSFFAKDLESSAPEWVRRTGIEHSTGTKSYPLVEDVPTLVWLAQTASLE
LHTPQWRFTADALPGPPDRLVLDLDPGEGVDLAACAEVARWARRTLEDIGMPPLPVTSGS
KGIHLYSPVPAGQTSDSVSALARELARSLEADHPDLVVSAMSKAARPGKVFVDWSQNNGK
KTTIAPYSLRGRERPTVAAPRTWDELDSPELAQLEFTAVLERAERMGDPLSALGFRGGER
VAERAPLRTYLAKRSADRTPEPVPDHPHADPWPPGGAPRFVIQEHHARRLHYDLRLERDG
VFVSWAVPKGVPASASRNHLAVMTEDHPLSYGGFEGTIPRGEYGAGTVTIWDDGSYELEK
WRDDEIIFTLAGRPDGPLGRARLALIRTDGEGEKSSWLLHRMKTADGEPPARDSAAAPPP
ATAPASDPDSRLTPARLRPMLAENASPALARSSARRWSAQWAEIKWDGIRALGFWDGARL
LLRARSGTDITARYPEVTGAATFLGDAPAVVDGEIVAFDAEGRPSFTLLQNRMHLTRAAE
IRVQAERVPVRFAVFDLLSSSGADLTSRPLRERRALLEERLADASGPFTVPPAFDDVDAA
LRASAAFDLEGVVVKNPDSTYRPGQRSGDWLKVKHIRTQEIVIGGIRPGRGGRSGTIGSL
LMGIPGPDGLRYVGRVGSGFDERTLRRLDELLAPLRSDSTPFMDVPDADASDADWVRPEL
VGEVAFAETTPDGRLRHARWRGLRPDKSPAEVRPEE
NT seq 2451 nt   +upstreamnt  +downstreamnt
atggcgcaggagcagcagaccgtgacggtcgggggacgccgcatccgcctcagtcgcctc
gacaagatcctgtatccggtgaccgggaccaccaaggcggaggtcgtggactattacgtc
cgcatcgccccgctcatgctcccccacctggagggtcgtccggtgacccgtaaacgctgg
ccggacggtgtcggcgacgccgcgcatccgggatcgtcgttcttcgcaaaggatctcgag
agcagcgcacccgagtgggtgcgccggacggggatcgagcattccaccgggacgaagtcc
tatcccctcgtcgaggatgtgccgacgctggtctggctcgcccagaccgcgagcctcgag
ctgcacacgccgcaatggcggttcaccgcggacgccctgcccggcccgcccgaccgtctc
gtcctggatctcgaccccggggagggcgtcgacctcgccgcgtgcgcggaggtcgcgcgc
tgggcccgccgcacgctcgaggacatcgggatgccgccgctcccggtcaccagcggcagc
aaaggcatccacctgtacagcccggtcccggccgggcagacgagcgattccgtgtcggcg
ctggcccgggagctcgcccgctcgctcgaagccgaccaccccgacctcgtggtcagtgcc
atgtcgaaggcggcccggcccggcaaggtgttcgtcgactggagccagaacaacggcaag
aagacgacgatcgccccgtactccctgcgcggacgcgagcgtccgaccgtcgccgcgccc
cgcacctgggacgagctcgactcccccgagctggcccagctcgagttcaccgcggtgctc
gagcgcgcggagcgcatgggcgacccgctgtcggcgctgggattccggggcggagagcgg
gtcgcggagcgcgcaccgttgcgcacctacctcgccaagcgctccgccgaccgcaccccc
gagcccgtccccgaccatccgcatgccgatccgtggccaccgggcggcgcgccgcgcttc
gtcatccaggagcaccacgcccggcggctgcactacgacctgcgccttgagcgcgacggg
gtgttcgtcagctgggccgtgcccaagggcgtcccggcgtcggcgagccgcaaccacctc
gcggtgatgaccgaggaccaccccctctcctacggcggcttcgagggcaccatcccgcgc
ggcgagtacggggccggcacggtcaccatctgggacgacggctcctacgagctcgagaaa
tggcgcgacgacgagatcatcttcaccctcgccgggcgcccggacgggccgctcgggcga
gcccgtctggccctcatccgcaccgacggcgagggcgagaaatccagctggctgctgcac
cgcatgaagacggcggatggggagccgcccgcacgggacagcgccgccgccccgccaccg
gcgacggcgcccgcatccgatccggactcacgcctcacccccgcccggctgcgccccatg
ctcgccgagaacgcctcgcccgcgctcgcgcgcagcagcgcgcgacggtggtcggctcag
tgggcggagatcaagtgggacggcatccgtgccctcgggttctgggacggtgcccggctc
ctcctgcgcgcccgcagcggtaccgacatcaccgcccgctatccggaggtgaccggcgcc
gccacgttcctcggcgacgcgccggccgtcgtcgacggcgagatcgtcgccttcgatgcc
gagggccgaccgagtttcaccctcctgcagaacaggatgcacctcacccgcgccgccgag
atccgcgtgcaagcggagcgcgtccccgtccgcttcgcggtcttcgacctgctctcctcg
tccggtgccgacctcaccagccgtccgctccgggagcgacgcgccctgctcgaggagcgc
ctggcggatgcgtccggccctttcacggtgccgcccgcattcgacgacgtggatgcggcg
ctgcgcgccagcgccgcgttcgatctggagggcgtcgtcgtcaagaacccggacagcacc
taccgccccggccagcgcagcggcgactggctcaaggtcaagcacatccgcacgcaggag
atcgtgatcggcgggatccgccccggccgaggcggccgttccggcacgatcgggtccctc
ctcatgggcatccccggccccgacggcctgcgctacgtcgggcgggtgggctcgggcttc
gacgagcgcaccctccgccggctggacgagctgctcgcaccactgcgcagcgacagcaca
ccgttcatggacgtcccggatgcggacgcatcggacgcggactgggtgcgccccgaactc
gtgggcgaggtcgccttcgccgagacgacccccgacggccggctgcgtcacgcgcgctgg
cggggactacgcccggacaagtcgcccgccgaggtgcgtcccgaggagtga

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